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Computational methods for translation regulation analysis from Ribo-seq data
2019Since its inception, Ribo-seq, a technique for deep sequencing the ribosome protected fragments (RPFs) of mRNA, has greatly expanded our knowledge of translation. With Ribo-seq, the coding potentials of the transcripts are re-evaluated, thousands of novel open reading frames (ORFs) are found translating, especially within those previously presumed non ...
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riboStreamR: A web application for quality control, analysis, and visualization of Ribo-seq data
2017 IEEE 7th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), 2017Patrick Perkins, Steffen Heber
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GWIPS-viz: development of a ribo-seq genome browser
Nucleic Acids Research, 2014Pavel Baranov +2 more
exaly
Implementing recombineering, Ribo-seq and DYI imaging to study plant hormones.
2019Every aspect of a plant life cycle, from germination to senescence, is coordinated by a small group of plant hormones. These small molecules do not work in isolation but through a complex network of interactions. In order to uncover the intricate interactions between different plant hormones, we have implemented a variety of technological tools, among ...
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Term-seq reveals abundant ribo-regulation of antibiotics resistance in bacteria
Science, 2016Pascale Cossart +2 more
exaly