Results 151 to 160 of about 16,252 (205)

Evaluation of RNA extraction and rRNA depletion protocols for RNA-Seq in eleven edible seaweed species from brown, red, and green algae.

PLoS ONE
Seaweeds represent a promising resource for food as well as pharmaceutical and cosmetic applications. However, genomic and transcriptomic research on these organisms remains underdeveloped, partly due to technical challenges in DNA/RNA extraction and ...
Rob J Dekker, Wim A Ensink, Marina F van Olst, Selina M van Leeuwen, Wim C de Leeuw, Martijs J Jonker, Timo M Breit   +6 more
doaj   +1 more source

Mutant NPM1 marginally impacts ribosome footprint in acute myeloid leukemia cells

eJHaem
Background NPM1‐mutated acute myeloid leukemia (AML) is the most frequent AML subtype. As wild‐type NPM1 is known to orchestrate ribosome biogenesis, it has been hypothesized that altered translation may contribute to leukemogenesis and leukemia ...
Lorenzo Brunetti, Giulia Pianigiani, Michael C. Gundry, Margaret A. Goodell, Brunangelo Falini   +4 more
doaj   +1 more source

Genome-wide analysis reveals transcriptional and translational changes during diapause of the Asian corn borer (Ostrinia furnacalis)

BMC Biology
Background Diapause, a pivotal phase in the insect life cycle, enables survival during harsh environmental conditions. Unraveling the gene expression profiles of the diapause process helps uncover the molecular mechanisms that underlying diapause, which ...
Xingzhuo Yang, Xianguo Zhao, Zhangwu Zhao, Juan Du   +3 more
doaj   +1 more source

Optimization of Ribosome Footprinting Conditions for Ribo-Seq in Human and <i>Drosophila melanogaster</i> Tissue Culture Cells. [PDF]

Front Mol Biosci, 2021
Douka K, Agapiou M, Birds I, Aspden JL.
europepmc   +1 more source

Sequence grammar and dynamics of subcellular translation revealed by APEX-Ribo-Seq

AbstractLocal translation at specific subcellular regions is proposed to define appropriate protein destinations and functions. However, our understanding of local translation is still far from complete, due to a lack of versatile analysis tools. Here, we developed a new method, termed “APEX-Ribo-Seq”, that integrates ribosome profiling (Ribo-Seq) with
Kotaro Tomuro, Takanori Akaiwa, Akane Harada, Kenta Kobayashi, Nobuyuki Shiina, Kyogo Kawaguchi, Yuichi Shichino, Shintaro Iwasaki   +7 more
openaire   +1 more source

p53 induces transcriptional and translational programs to suppress cell proliferation and growth [PDF]

, 2013

core   +1 more source

How tailored Ribo-seq methods probe unique translation events. [PDF]

RNA
Marks J, Meydan S.
europepmc   +1 more source

ggRibo: a ggplot-based single-gene viewer for visualizing Ribo-seq and related omics datasets

ABSTRACTVisualizing periodic Ribo-seq data within genes of interest is a powerful approach to studying mRNA translation, but its application is limited by a lack of robust tools. Here, we introduceggRibo, a user-friendly R package for visualizing individual gene expression, integrating Ribo-seq, RNA-seq, and other genome-wide datasets with flexible ...
Hsin-Yen Larry Wu, Isaiah D. Kaufman, Polly Yingshan Hsu   +2 more
openaire   +2 more sources

InspectorORF: a tool for visualizing Ribo-Seq and additional genomic or transcriptomic data. [PDF]

Bioinform Adv
Ward EL, Birds I, O'Connell MJ, Westhead DR, Aspden JL.   +4 more
europepmc   +1 more source

Data-driven design of LNA-blockers for efficient contaminant removal in Ribo-Seq libraries. [PDF]

Sci Rep
Ricciardi DA, Peter FE, Böhmer M.
europepmc   +1 more source