Results 1 to 10 of about 2,471,591 (313)

Structural Biology of Bacterial RNA Polymerase [PDF]

open access: yesBiomolecules, 2015
Since its discovery and characterization in the early 1960s (Hurwitz, J. The discovery of RNA polymerase. J. Biol. Chem. 2005, 280, 42477–42485), an enormous amount of biochemical, biophysical and genetic data has been collected on bacterial RNA ...
Katsuhiko S. Murakami
doaj   +5 more sources

Estimating the Postmortem Interval of Carcasses in the Water Using the Carrion Insect, Brain Tissue RNA, Bacterial Biofilm, and Algae. [PDF]

open access: yesFront Microbiol, 2021
The accurate estimation of postmortem interval (PMI) is crucial in the investigation of homicide cases. Unlike carcasses on land, various biological and abiotic factors affect the decomposition of carcasses in water. In addition, the insect evidence (e.g.
Wang Y   +5 more
europepmc   +2 more sources

Phylogenetic and Functional Diversity of Total (DNA) and Expressed (RNA) Bacterial Communities in Urban Green Infrastructure Bioswale Soils. [PDF]

open access: yesAppl Environ Microbiol, 2017
New York City (NYC) is pioneering green infrastructure with the use of bioswales and other engineered soil-based habitats to provide stormwater infiltration and other ecosystem functions.
Gill AS, Lee A, McGuire KL.
europepmc   +2 more sources

RNA Thermometers in Bacterial Pathogens [PDF]

open access: yesMicrobiology Spectrum, 2018
Temperature variation is one of the multiple parameters a microbial pathogen encounters when it invades a warm-blooded host. To survive and thrive at host body temperature, human pathogens have developed various strategies to sense and respond to their ...
E. Loh   +4 more
semanticscholar   +5 more sources

Regulating Bacterial Virulence with RNA. [PDF]

open access: yesAnnual Review of Microbiology, 2017
Noncoding RNAs (ncRNAs) regulating virulence have been identified in most pathogens. This review discusses RNA-mediated mechanisms exploited by bacterial pathogens to successfully infect and colonize their hosts.
J. Quereda, P. Cossart
semanticscholar   +9 more sources

Bacterial RNA Biology on a Genome Scale. [PDF]

open access: yesMolecular Cell, 2018
Bacteria are an exceedingly diverse group of organisms whose molecular exploration is experiencing a renaissance. While the classical view of bacterial gene expression was relatively simple, the emerging view is more complex, encompassing extensive post-transcriptional control involving riboswitches, RNA thermometers, and regulatory small RNAs (sRNAs ...
Jens Hör, S. Gorski, J. Vogel
semanticscholar   +4 more sources

RNA‐Seq for Bacterial Gene Expression [PDF]

open access: yesCurrent Protocols in Nucleic Acid Chemistry, 2018
RNA sequencing (RNA‐seq) has become the preferred method for global quantification of bacterial gene expression. With the continued improvements in sequencing technology and data analysis tools, the most labor‐intensive and expensive part of an RNA‐seq ...
L. D. Poulsen, Jeppe Vinther
semanticscholar   +4 more sources

Quantitative bacterial transcriptomics with RNA-seq. [PDF]

open access: yesCurrent Opinion in Microbiology, 2015
RNA sequencing has emerged as the premier approach to study bacterial transcriptomes. While the earliest published studies analyzed the data qualitatively, the data are readily digitized and lend themselves to quantitative analysis. High-resolution RNA sequence (RNA-seq) data allows transcriptional features (promoters, terminators, operons, among ...
J. Creecy, T. Conway
semanticscholar   +4 more sources

An improved bacterial single-cell RNA-seq reveals biofilm heterogeneity [PDF]

open access: yeseLife
In contrast to mammalian cells, bacterial cells lack mRNA polyadenylated tails, presenting a hurdle in isolating mRNA amidst the prevalent rRNA during single-cell RNA-seq. This study introduces a novel method, ribosomal RNA-derived cDNA depletion (RiboD),
Xiaodan Yan   +6 more
doaj   +2 more sources

Oxford nanopore technologies—a valuable tool to generate whole-genome sequencing data for in silico serotyping and the detection of genetic markers in Salmonella

open access: yesFrontiers in Veterinary Science, 2023
Bacteria of the genus Salmonella pose a major risk to livestock, the food economy, and public health. Salmonella infections are one of the leading causes of food poisoning.
Christine Thomas   +4 more
doaj   +1 more source

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