Results 31 to 40 of about 994,915 (210)

Analysis of the bacterial communities in the rhizosphere of Chrysanthemum via denaturing gradient gel electrophoresis of PCR- amplified 16S rRNA as well as DNA fragments coding for 16S rRNA [PDF]

, 2001
The effect of developing chrysanthemum roots on the presence and activity of bacterial populations in the rhizosphere was examined by using culture-independent methods.
Anneke Keijzer, Van Elsas, J.D., Duineveld, B.M., Kowalchuk, G.A., Van Veen, J.A., George A. Kowalchuk, Jan Dirk van Elsas, Keijzer, A., Veen, J.A., van, Bernadette M. Duineveld, Elsas, J.D., van, Johannes A. van Veen   +11 more
core   +1 more source

Isolation and Phylogenetic Analysis of Thermophile Community Within Tanjung Sakti Hot Spring, South Sumatera, Indonesia

Hayati Journal of Biosciences, 2015
A community of thermophiles within Tanjung Sakti Hot Spring (South Sumatera) have been cultivated and identified based on 16S ribosomal RNA gene sequence. The hot spring has temperature 80 °C–91 °C and pH 7–8.
Heni Yohandini, Julinar, Muharni
doaj   +1 more source

Metaxa : a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets [PDF]

, 2011
Peer ...
Belle Damodara Shenoy, Hartmann, Martin, Alm Rosenblad, Magnus, Kessy Abarenkov, Nilsson, R. Henrik,, Wang, Zheng, Zheng, Wang, Alm Rosenblad, Magnus,, Eriksson, Martin, Petri, Anna,, Rosenblad, Magnus Alm, Grelet, Gwen-Aelle, Abarenkov, Kessy, Johan Bengtsson, Eriksson, K. Martin, Shenoy, Belle Damodara, Zheng Wang, Nilsson, R. Henrik, Gwen-Aëlle Grelet, Anna Petri, Martin Hartmann, Bengtsson, Johan, Bengtsson-Palme, Johan,, Eriksson, Karl Martin,, K. Martin Eriksson, Magnus Alm Rosenblad, R. Henrik Nilsson, Eriksson, Martin,, Petri, Anna, Bengtsson, Johan,, Hartmann, Martin,, Grelet, Gwen-A\ueblle   +31 more
core   +1 more source

Taxonomic and Characterization Methods of Streptomyces: A Review

Progress in Microbes and Molecular Biology, 2018
The 16S ribosomal RNA gene is the gold standard for taxonomic identification and phylogenetic study of most of the bacteria. However, the resolution of 16S rRNA gene is found to be insufficient to distinguish closely related Streptomyces species within ...
Jodi Woan-Fei Law, Kei-Xian Tan, Sunny Hei Wong, Nurul-Syakima Ab Mutalib, Learn-Han Lee   +4 more
doaj   +1 more source

L11 domain rearrangement upon binding to RNA and thiostrepton studied by NMR spectroscopy [PDF]

, 2006
Ribosomal proteins are assumed to stabilize specific RNA structures and promote compact folding of the large rRNA. The conformational dynamics of the protein between the bound and unbound state play an important role in the binding process.
Wöhnert, Jens, Hendrik R. A. Jonker, Harald Schwalbe, Ilin, Serge, S. Kaspar Grimm, Grimm, Steffen Kaspar, Jens Wöhnert, Jonker, Hendrik R. A., Schwalbe, Harald (Prof. Dr.), Serge Ilin   +9 more
core   +2 more sources

A comprehensive comparison of comparative RNA structure prediction approaches [PDF]

, 2004
Gardner PP, Giegerich R. A comprehensive comparison of comparative RNA structure prediction approaches. BMC Bioinformatics. 2004;5(1): 140.Background: An increasing number of researchers have released novel RNA structure analysis and prediction ...
Giegerich, R., Gardner, Paul P., Gardner, P. P., Paul P Gardner, Robert Giegerich, Giegerich, Robert, Giegerich Robert, Gardner Paul P   +7 more
core   +1 more source

TaxCollector: Modifying Current 16S rRNA Databases for the Rapid Classification at Six Taxonomic Levels

Diversity, 2010
The high level of conservation of 16S ribosomal RNA gene (16S rRNA) in all Prokaryotes makes this gene an ideal tool for the rapid identification and classification of these microorganisms. Databases such as the Ribosomal Database Project II (RDP-II) and
Eric W. Triplett, David B. Crabb, Austin G. Davis-Richardson, Adriana Giongo   +3 more
doaj   +1 more source

Measurement of the rates of synthesis of three components of ribosomes of Mycobacterium fortuitum: a theoretical approach to qRT-PCR experimentation. [PDF]

PLoS ONE, 2010
BACKGROUND: Except for the ribosomal protein L12 (rplL), ribosomal proteins are present as one copy per ribosome; L12 (rplL) is unusual because it is present as four copies per ribosome.
Maria Jesus Garcia, Maria Carmen Nuñez, Robert Ashley Cox   +2 more
doaj   +1 more source

Role of 16‐S RNA in Ribosome Messenger Recognition [PDF]

European Journal of Biochemistry, 1980
The deoxyoctanucleotide (5′‐3′)d(A‐A‐G‐G‐A‐G‐G‐T), which is complementary to the 3′ end of 16‐S RNA, inhibits the formation of the complex between the 30‐S subunit and MS2 RNA described in the preceding paper. If the complex is preformed, the octanucleotide cannot prevent entry of the complex into the ribosome cycle upon supplementation with the ...
C, Backendorf, G P, Overbeek, J H, Van Boom, G, Van Der Marel, G, Veeneman, J, Van Duin   +5 more
openaire   +2 more sources

Identification and Phylogenetic Analysis of Bacterial Isolates from Litopenaeus vannamei Shrimp Culture System and Gut Environment Based on 16SrRNA Gene Sequence Data

Microbiology Indonesia, 2010
Selected bacterial isolates from a Litopenaeus vannamei shrimp culture system and gut environment were assessed using 16S rRNA gene sequencing method to identify their identity and to construct their phylogenetic relationship.
TUBAGUS HAERU RAHAYU, INDRAWATI GANDJAR, ETTY RIANI, IIN SITI DJUNAIDAH, WELLYZAR SJAMSURIDZAL   +4 more
doaj   +1 more source