Results 11 to 20 of about 601,872 (302)

Sensitive visualization of SARS-CoV-2 RNA with CoronaFISH

open access: yesLife Science Alliance, 2022
We design an RNA-FISH method to target the plus and minus strands of SARS-CoV-2 RNA, and apply it to image the virus in cell lines, lung tissue, and nasal swabs, by fluorescence and electron microscopy.
Elena Rensen   +14 more
doaj   +1 more source

Uncovering the expression patterns of chimeric transcripts using surveys of affymetrix GeneChips. [PDF]

open access: yes, 2010
BACKGROUND: A chimeric transcript is a single RNA sequence which results from the transcription of two adjacent genes. Recent studies estimate that at least 4% of tandem human gene pairs may form chimeric transcripts. Affymetrix GeneChip data are used to
da Silva Camargo, R   +4 more
core   +2 more sources

Combined in vitro transcription and reverse transcription to amplify and label complex synthetic oligonucleotide probe libraries

open access: yesBioTechniques, 2015
Oligonucleotide microarrays allow the production of complex custom oligonucleotide libraries for nucleic acid detection–based applications such as fluorescence in situ hybridization (FISH). We have developed a PCR-free method to make single-stranded DNA (
Yusuf Murgha   +6 more
doaj   +1 more source

A Comprehensive Analysis of Northern versus Liquid Hybridization Assays for mRNAs, Small RNAs, and miRNAs Using a Non-Radiolabeled Approach

open access: yesCurrent Issues in Molecular Biology, 2021
Northern blotting (NB), a gold standard for RNA detection, has lost its charm due to its hands-on nature, need for good quality RNA, and radioactivity.
Waqar Ahmad   +3 more
doaj   +1 more source

Organism-specific rRNA capture system for application in next-generation sequencing.

open access: yesPLoS ONE, 2013
RNA-sequencing is a powerful tool in studying RNomics. However, the highly abundance of ribosomal RNAs (rRNA) and transfer RNA (tRNA) have predominated in the sequencing reads, thereby hindering the study of lowly expressed genes.
Sai-Kam Li   +6 more
doaj   +1 more source

Tissue-specific Expression of Distinct Spectrin and Ankyrin Transcripts in Erythroid and Nonerythroid Cells [PDF]

open access: yes, 1985
cDNA probes for three components of the erythroid membrane skeleton, α spectrin, β spectrin, and ankyrin, were obtained by using monospecific antibodies to screen a λgt11 expression vector library containing cDNA prepared from chicken erythroid poly(A)^+
Lazarides, Elias   +3 more
core   +3 more sources

Affinity Purification of RNA: Sequence-Specific Capture by Nonionic Morpholino Probes

open access: yesBioTechniques, 1997
Nucleic acid isolation for amplification-based diagnostics requires techniques that do not co-purify inhibitors of DNA polymerases. Also, other requirements for an ideal sample preparation technology include ease of use, capability for automation, high ...
J.M. Wages   +4 more
doaj   +1 more source

Probing RNA Folding Pathways by RNA Fingerprinting [PDF]

open access: yesCurrent Protocols in Nucleic Acid Chemistry, 2000
AbstractThis unit provides protocols for using native polyacrylamide gel electrophoresis to distinguish folding and unfolding conformers of RNA. It is useful for studying conformers that can exchange in a period of minutes or seconds, and that are thus difficult to study by solution‐based methods.
openaire   +4 more sources

Identification of artifactual microarray probe signals constantly present in multiple sample types

open access: yesBioTechniques, 2012
The detection, identification, and quantitation of transcripts have evolved from simple Northern analysis, cDNA cloning, and sequencing to RT-PCR, microarrays, and now digital gene expression using ultra–high-throughput RNA sequencing (RNA-Seq).
Shihong Mao   +3 more
doaj   +1 more source

Visualization of RNA at the Single Cell Level by Fluorescent in situ Hybridization Coupled to Flow Cytometry

open access: yesBio-Protocol, 2018
The protocol described here has been developed to detect RNA at the single cell level. Fluorescent probes hybridize to target RNAs and are detected by flow cytometry after multiple amplification steps. Different types of RNA can be detected such as mRNA,
Alice Coillard, Elodie Segura
doaj   +1 more source

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