Results 271 to 280 of about 93,670 (312)
Some of the next articles are maybe not open access.
Single-Cell RNAseq Complexity Reduction
2022An important step in single-cell RNAseq data analysis is the preparation of the single cell transcription data for cell sub-population partitioning. In this chapter, we describe how to perform complexity reduction for 3' end single-cell RNAseq transcriptomics data.
Cordero, Francesca, Calogero, Raffaele A
openaire +2 more sources
Single-Cell RNAseq Analysis of lncRNAs
2021Mammalian genomes are pervasively transcribed and a small fraction of RNAs produced codify for proteins. The importance of noncoding RNAs for the maintenance of cell functions is well known (e.g., rRNAs, tRNAs), but only recently it was first demonstrated the involvement of microRNAs (miRNAs) in posttranscriptional regulation and then the activity of ...
Cagnin S. +3 more
openaire +2 more sources
Annales de pathologie, 2021
High throughput RNA sequencing, also know as RNAseq, can easily be performed on the gold-standard technique of formalin-fixed paraffin-embedded tissue, which has long been successfully used in routine practice by pathologists. For this reason, RNAseq has been fully adopted in a very short period of time in most French molecular platforms of cancer ...
Nicolas, Piton +4 more
openaire +1 more source
High throughput RNA sequencing, also know as RNAseq, can easily be performed on the gold-standard technique of formalin-fixed paraffin-embedded tissue, which has long been successfully used in routine practice by pathologists. For this reason, RNAseq has been fully adopted in a very short period of time in most French molecular platforms of cancer ...
Nicolas, Piton +4 more
openaire +1 more source
Phospho-RNAseq Profiling of Extracellular mRNAs and lncRNAs
2021Extracellular RNAs (exRNAs) in biofluids have attracted great interest as potential biomarkers. Although extracellular microRNAs in blood plasma are extensively characterized, extracellular messenger RNA (mRNA) and long noncoding RNA (lncRNA) studies are limited. We have recently reported that human plasma contains fragmented mRNAs and lncRNAs that are
Maria D, Giraldez, Muneesh, Tewari
openaire +2 more sources
Single-Cell RNAseq Data QC and Preprocessing
2022The first step in single-cell RNAseq data analysis is the evaluation of the overall quality of the cell transcriptome and the preparation of the single-cell transcription data for clustering. In this chapter, we describe one of the possible approaches to perform single-cell data preprocessing for 3' end single-cell RNAseq transcriptomics data.
Olivero, Martina, Calogero, Raffaele A
openaire +2 more sources
Quantifying alternative polyadenylation in RNAseq data with LABRAT
2021Alternative polyadenylation (APA) generates transcript isoforms that differ in their 3' UTR content and may therefore be subject to different regulatory fates. Although the existence of APA has been known for decades, quantification of APA isoforms from high-throughput RNA sequencing data has been difficult.
Austin E, Gillen +2 more
openaire +2 more sources
Bioinformatic Pipelines to Analyze lncRNAs RNAseq Data
2021RNA-sequencing could be nowadays considered the gold standard to study the coding and noncoding transcriptome. The great advantage of high-throughput sequencing in the characterization and quantification of long noncoding RNA (lncRNA) resides in its capability to capture the complexity of lncRNA transcripts configuration patterns, even in the presence ...
Luca, Agnelli +2 more
openaire +2 more sources
RNAseqâbased phylogenetic reconstruction of Taxaceae and Cephalotaxaceae
Cladistics, 2018AbstractTaxaceae and Cephalotaxaceae are the two economically important conifer families. Over the years there has been much controversy over the issue of merging these families. The position of Amentotaxus and Torreya is also ambiguous. Some authors consider them closer to Taxaceae while others deemed them to fit within Cephalotaxaceae.
Aasim Majeed +3 more
openaire +2 more sources