Results 51 to 60 of about 93,670 (312)

sequana/rnaseq: v0.14.2

, 2021
Fix the missing feature counts in multiqc ...
Thomas Cokelaer, Etienne Kornobis
core   +1 more source

A high coverage reference transcriptome assembly of pea (Pisum sativum L.) mycorrhizal roots

Вавиловский журнал генетики и селекции, 2020
Arbuscular mycorrhiza (AM) is an ancient mutualistic symbiosis formed by 80–90 % of land plant species with the obligatorily biotrophic fungi that belong to the phylum Glomeromycota.
A. M. Afonin, I. V. Leppyanen, O. A. Kulaeva, O. Y. Shtark, I. A. Tikhonovich, E. A. Dolgikh, V. A. Zhukov   +6 more
doaj   +1 more source

KDM7A and KDM1A inhibition suppresses tumour promoting pathways in prostate cancer

Molecular Oncology, EarlyView.
Treatment resistance is a major challenge for patients with advanced prostate cancer. This study examined an alternative approach to target the major prostate cancer‐promoting pathway by targeting epigenetic factors, whose levels are higher in tumours.
Jennie N Jeyapalan, Veronika M Metzler, Simone de Brot, Corinne L Woodcock, Anna E Harris, Jennifer Lothion‐Roy, Emeli M Nilsson, Atara Ntekim, Michael S Toss, Jenny L Persson, Francesca Khani, Brian D Robinson, Lorraine J Gudas, Emad Rakha, David M Heery, Catrin S Rutland, Nigel P Mongan   +16 more
wiley   +1 more source

Neurospora-RNAseq-Variant-ID v1.0

, 2016
Scripts for calling variants from RNAseq ...
Kolea Zimmerman
core   +1 more source

Achievements and prospects of applying high-throughput sequencing techniques to potato genetics and breeding

Вавиловский журнал генетики и селекции, 2017
In recent years, marker-assisted selection (MAS) has been intensively used to increase potato breeding efficiency. Large-scale studies of the potato genome and genes exploiting next-generation sequence (NGS) approaches are required for broad application ...
I. V. Bykova, N. A. Shmakov, D. A. Afonnikov, A. V. Kochetov, E. K. Khlestkina   +4 more
doaj   +1 more source

Changing Technologies of RNA Sequencing and Their Applications in Clinical Oncology

Frontiers in Oncology, 2020
RNA sequencing (RNAseq) is one of the most commonly used techniques in life sciences, and has been widely used in cancer research, drug development, and cancer diagnosis and prognosis.
Ye Wang, Michael Mashock, Zhuang Tong, Xiaofeng Mu, Xiaofeng Mu, Hong Chen, Xin Zhou, Hong Zhang, Gexin Zhao, Bin Liu, Xinmin Li   +10 more
doaj   +1 more source

Hijacking emergency granulopoiesis: Neutrophil ontogeny and reprogramming in cancer

Molecular Oncology, EarlyView.
Neutrophils are highly plastic innate immune cells; their functions in cancer extend beyond the tumour microenvironment. This Review summarises current understanding of neutrophil maturation and heterogeneity and highlights tumour‐induced granulopoiesis as a systemic programme that expands immature, immunosuppressive neutrophils via tumour‐derived ...
Gabriela Marinescu, Yi Feng
wiley   +1 more source

MSI expresso: a software for determining MSI status and detecting MSI-related transcription events from RNA sequencing data

Frontiers in Genetics
Summary: Microsatellite instability (MSI) is becoming increasingly important in oncology as it has been reported across more than two dozen of solid cancer types.
Emmanuel Tubacher, Alexandre How-Kit, Mourad Sahbatou, Alex Duval, Victor Renault, Jean-François Deleuze, Jean-François Deleuze   +6 more
doaj   +1 more source

In silico Analysis of Publicly Available Transcriptomics Data Identifies Putative Prognostic and Therapeutic Molecular Targets for Papillary Thyroid Carcinoma

International Journal of General Medicine, 2022
Asma Almansoori,1,* Poorna Manasa Bhamidimarri,1,* Riyad Bendardaf,2,3 Rifat Hamoudi1,2,4 1Sharjah Institute for Medical Research, University of Sharjah, Sharjah, United Arab Emirates; 2College of Medicine, University of Sharjah, Sharjah, United ...
Almansoori A, Bhamidimarri PM, Bendardaf R, Hamoudi R   +3 more
doaj  

Experimentally Deduced Criteria for Detection of Clinically Relevant Fusion 3′ Oncogenes from FFPE Bulk RNA Sequencing Data

Biomedicines, 2022
Drugs targeting receptor tyrosine kinase (RTK) oncogenic fusion proteins demonstrate impressive anti-cancer activities. The fusion presence in the cancer is the respective drug prescription biomarker, but their identification is challenging as both the ...
Elizaveta Rabushko, Maxim Sorokin, Maria Suntsova, Alexander P. Seryakov, Denis V. Kuzmin, Elena Poddubskaya, Anton A. Buzdin   +6 more
doaj   +1 more source