Results 31 to 40 of about 18,469,580 (392)

BeStSel: a web server for accurate protein secondary structure prediction and fold recognition from the circular dichroism spectra

Nucleic Acids Res., 2018
Circular dichroism (CD) spectroscopy is a widely used method to study the protein secondary structure. However, for decades, the general opinion was that the correct estimation of β-sheet content is challenging because of the large spectral and ...
András Micsonai, F. Wien, Éva Bulyáki, J. Kun, Éva Moussong, Young-Ho Lee, Y. Goto, M. Réfrégiers, J. Kardos   +8 more
semanticscholar   +1 more source

Allosteric mechanism of the V. vulnificus adenine riboswitch resolved by four-dimensional chemical mapping

eLife, 2018
The structural interconversions that mediate the gene regulatory functions of RNA molecules may be different from classic models of allostery, but the relevant structural correlations have remained elusive in even intensively studied systems.
Siqi Tian, Wipapat Kladwang, Rhiju Das
doaj   +1 more source

Evidence of β-sheet structure induced kinetic stability of papain upon thermal and sodium dodecyl sulphate denaturation [PDF]

Journal of the Serbian Chemical Society, 2015
Papain is a protease that consists of α-helical and β-sheet domains which unfold almost independently. Both, papain considerable thermal stability and sodium dodecyl sulphate (SDS) resistance have been shown.
Rašković Brankica, Babić Nikolina, Korać Jelena, Polović Natalija   +3 more
doaj   +1 more source

RNA secondary structure prediction from multi-aligned sequences [PDF]

, 2013
It has been well accepted that the RNA secondary structures of most functional non-coding RNAs (ncRNAs) are closely related to their functions and are conserved during evolution.
A Balik, A Pauli, A Wilm, A Wilm, AC Penn, AR Gruber, AS Richter, B Knudsen, B Knudsen, C Witwer, CB Do, D Jager, D Sankoff, D Wei, DH Mathews, DH Mathews, E Bindewald, E Freyhult, E Rivas, EJ Meer, H Kiryu, H Yonemoto, IA Qureshi, IL Hofacker, IL Hofacker, IV Novikova, J Ruan, J Spirollari, JG Underwood, JM Watts, JR Proctor, JS McCaskill, JT Low, K Katoh, K Sato, K Sato, K Sato, KM Wong, LE Carvalho, M Andronescu, M Andronescu, M Esteller, M Hamada, M Hamada, M Hamada, M Hamada, M Hamada, M Hamada, M Hamada, M Hamada, M Kertesz, ME Nebel, MS Andronescu, P Ge, PP Gardner, PS Pang, R Luck, RD Dowell, RJ Klein, S Washietl, S Washietl, S Washietl, S Washietl, SE Seemann, SE Seemann, SH Bernhart, SM Sahraeian, SW Burge, T Puton, T Xia, Y Kato, Z Sukosd   +71 more
core   +1 more source

JPred4: a protein secondary structure prediction server

Nucleic Acids Res., 2015
JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure prediction.
Alexey Drozdetskiy, C. Cole, J. Procter, G. Barton   +3 more
semanticscholar   +1 more source

2Struc: the secondary structure server [PDF]

Bioinformatics, 2010
Abstract Summary: The defined secondary structure of proteins method is often considered the gold standard for assignment of secondary structure from three-dimensional coordinates. However, there are alternative methods. ‘2Struc: The Secondary Structure Server’ has been created as a single point of access for eight different secondary ...
Bonnie A. Wallace, D. P. Klose, Robert W. Janes   +2 more
openaire   +3 more sources

Towards more realistic dynamical models for DNA secondary structure [PDF]

, 2005
We propose a dynamical model for the secondary structure of DNA, which is based on the finite stacking enthalpies used in thermodynamics calculations. In this model, the two strands can separate and the bases are allowed to rotate perpendicular to the ...
Buyukdagli, Sahin, Joyeux, Marc, Sanrey, Michaël   +2 more
core   +2 more sources

Distribution and Evolutionary History of the Mobile Genetic Element s2m in Coronaviruses

Diseases, 2016
The mobile genetic element s2m has been described in several families of single-stranded RNA viruses. The function remains elusive, but an increasing number of s2m-containing sequences are being deposited in publicly available databases.
Torstein Tengs, Christine M. Jonassen
doaj   +1 more source

RNA secondary structure prediction using an ensemble of two-dimensional deep neural networks and transfer learning

Nature Communications, 2019
The majority of our human genome transcribes into noncoding RNAs with unknown structures and functions. Obtaining functional clues for noncoding RNAs requires accurate base-pairing or secondary-structure prediction.
Jaswinder Singh, Jack Hanson, K. Paliwal, Yaoqi Zhou   +3 more
semanticscholar   +1 more source

The pedagogical model for developing research/investigation competence in primary school students (Natural Sciences)

Studia Universitatis Babeş-Bolyai. Psychologia-Paedagogia
The article presents the theoretical foundation of the pedagogical model for developing research/investigation competence in primary school students (Natural Sciences) - DCCI-ECP (NS).
Marieta NEAGU
doaj   +1 more source