Results 171 to 180 of about 18,178,221 (305)

Predict the degree of secondary structures of the encoding sequences in DNA storage by deep learning model. [PDF]

Sci Rep
Lin W, Chu L, Yao X, Chen Z, Xu P, Liu W.   +5 more
europepmc   +1 more source

Tertiary lymphoid structures in the era of cancer immunotherapy

Nature Reviews. Cancer, 2019
C. Sautès-Fridman, F. Petitprez, J. Calderaro, W. Fridman   +3 more
semanticscholar   +1 more source

Structural studies and functional engineering of NanX: an anhydro‐sialic acid transporter from Escherichia coli

FEBS Open Bio, EarlyView.
Biophysical characterisation shows that NanX, a membrane transport protein from the major facilitator superfamily (MFS), forms both monomers and dimers after purification. AlphaFold modelling and substrate docking provide information on residues likely involved in substrate recognition for NanX and another MFS member, NanT.
Michael C. Newton‐Vesty, Kelsi R. Hall, Zachary D. Tillett, Liam S. Turk, James S. Davies, Michael J. Currie, Hamish G. Brown, Sepideh Valimehr, Peter D. Mace, Andrew E. Whitten, Santosh Panjikar, Eric Hanssen, Rachel A. North, Renwick C.J. Dobson   +13 more
wiley   +1 more source

Unraveling unbreakable hairpins: characterizing RNA secondary structures that are persistent after dinucleotide shuffling. [PDF]

RNA
Pratt AA, Hendrix DA.
europepmc   +1 more source

SECONDARY STRUCTURE IN RIBONUCLEIC ACIDS [PDF]

Proceedings of the National Academy of Sciences, 1959
P, Doty, H, Boedtker, J R, Fresco, R, Haselkorn, M, Litt   +4 more
openaire   +2 more sources

Adenosine triphosphate as a modulator of protein interactions and stability

FEBS Open Bio, EarlyView.
ATP is best known as the cell's energy currency, but it also shapes how proteins fold, interact, aggregate and form biomolecular condensates. This review explains the emerging physical principles behind these effects, including weak binding to charged protein regions, magnesium‐dependent behaviour and concentration‐dependent control of protein ...
Shuyuan Tan, Robin Curtis
wiley   +1 more source

Enumerative Discovery of Noncanonical Polypeptide Secondary Structures. [PDF]

J Am Chem Soc
Moyer AP, Ramelot TA, Curti M, Eastman MA, Kang A, Bera AK, Tejero R, Salveson PJ, Curutchet C, Romero E, Montelione GT, Baker D.   +11 more
europepmc   +1 more source

The effect of the genomic GC content bias of prokaryotic organisms on the secondary structures of their proteins. [PDF]

PLoS One, 2023
Barceló-Antemate D, Fontove-Herrera F, Santos W, Merino E.   +3 more
europepmc   +1 more source

Purification and preparation of Marchantia polymorpha Auxin Response Factor 2 for phase separation studies

FEBS Open Bio, EarlyView.
We describe detailed protocols for the purification and preparation of Marchantia polymorpha Auxin Response Factor 2 (MpARF2). This protein is fused to an MBP solubility tag and an mNG fluorescent tag and is purified from Escherichia coli. The presented procedures make it possible to study MpARF2 assemblies, which could arise from phase separation ...
Bas Janssen, Robin Romein, Willy A. M. van den Berg, Simon Lindhoud, Jan Willem Borst, Carlo P. M. van Mierlo   +5 more
wiley   +1 more source

Transcription factor prediction using protein 3D secondary structures. [PDF]

Bioinformatics
Liebold J, Neuhaus F, Geiser J, Kurtz S, Baumbach J, Newaz K.   +5 more
europepmc   +1 more source