Results 21 to 30 of about 1,966,827 (316)

Progressive search in tandem mass spectrometry

BMC Bioinformatics, 2023
Background High-throughput Proteomics has been accelerated by (tandem) mass spectrometry. However, the slow speed of mass spectra analysis prevents the analysis results from being up-to-date.
Yoonsung Joh, Kangbae Lee, Hyunwoo Kim, Heejin Park   +3 more
doaj   +1 more source

Real or fake? Measuring the impact of protein annotation errors on estimates of domain gain and loss events

Frontiers in Bioinformatics, 2023
Protein annotation errors can have significant consequences in a wide range of fields, ranging from protein structure and function prediction to biomedical research, drug discovery, and biotechnology.
Arnaud Kress, Olivier Poch, Odile Lecompte, Julie D. Thompson   +3 more
doaj   +1 more source

BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data

Biology Direct, 2022
Bacterial microcompartments (BMCs) are protein-based organelles found across the bacterial tree of life. They consist of a shell, made of proteins that oligomerize into hexagonally and pentagonally shaped building blocks, that surrounds enzymes ...
Markus Sutter, Cheryl A. Kerfeld
doaj   +1 more source

Filtering Degenerate Patterns with Application to Protein Sequence Analysis

Algorithms, 2013
In biology, the notion of degenerate pattern plays a central role for describing various phenomena. For example, protein active site patterns, like those contained in the PROSITE database, e.g., [FY ]DPC[LIM][ASG]C[ASG], are, in general, represented by ...
Matteo Comin, Davide Verzotto
doaj   +1 more source

Herding cats: Label-based approaches in protein translocation through nanopore sensors for single-molecule protein sequence analysis

iScience, 2021
Summary: Proteins carry out life's essential functions. Comprehensive proteome analysis technologies are thus required for a full understanding of the operating principles of biological systems. While current proteomics techniques suffer from limitations
Keisuke Motone, Nicolas Cardozo, Jeff Nivala   +2 more
doaj   +1 more source

Computational curation and analysis of publicly available protein sequence data from a single protein family

MethodsX, 2022
The wealth of sequence data available on public databases is increasing at an exponential rate, and while tremendous efforts are being made to make access to these resources easier, these data can be challenging for researchers to reuse because ...
Kyra Dougherty, Katalin A. Hudak
doaj   +1 more source

Analysis of protein sequences [PDF]

Genome Biology, 2000
Several programs to predict sequence and structural features of a protein can be run simultaneously on the PredictProtein server.
openaire   +1 more source

Functional and Immunological Relevance of Anaplasma marginale Major Surface Protein 1a Sequence and Structural Analysis. [PDF]

, 2013
Bovine anaplasmosis is caused by cattle infection with the tick-borne bacterium, Anaplasma marginale. The major surface protein 1a (MSP1a) has been used as a genetic marker for identifying A.
Barbosa Ribeiro, Mucio Flavio, M. F., Ferrolho, Joana, Zweygarth, Erich, José de la Fuente (35632), Ribeiro, Mucio F. B., Valdés, J.J., Cabezas Cruz, Alejandro, Erich Zweygarth, Katherine M Kocan, Miray Tonk (420443), Rachel Kenneil, Cabezas-Cruz, A., Rachel Kenneil (420441), Anna E. Pohl (420444), Estrada-Peña, A., Miray Tonk, Agustín Estrada-Peña (52766), Ribeiro, M.F.B., Lygia M F Passos, Katarzyna Lis, de la Fuente, J., James J Valdés, Kocan, Katherine M., Zweygarth, E., de la Fuente, José, Mucio F. B. Ribeiro (420448), Alejandro Cabezas-Cruz, Libor Grubhoffer, Lygia M. F. Passos (420439), Estrada-Peña, Agustín, Agustín Estrada-Peña, Lis, K., Katherine M. Kocan (326058), Valdes, James J, Joana Ferrolho (420442), Kenneil, Rachel, Kocan, K.M., Passos, Lygia Maria Friche, James J. Valdés (409724), Passos, Lygia M. F., Erich Zweygarth (420446), Valdés, James J., Shkap, Varda, Pohl, Anna E., Varda Shkap, Pohl, A.E., Varda Shkap (420447), Libor Grubhoffer (420445), Grubhoffer, L., Lis, Katarzyna, Tonk, Miray, Katarzyna Lis (420440), Alejandro Cabezas-Cruz (420438), Cabezas-Cruz, Alejandro, Passos, Lygia, Tonk, M., Mucio F B Ribeiro, Kenneil, R., Anna E Pohl, Joana Ferrolho, Shkap, V., José de la Fuente, Ferrolho, J., Barbosa Ribeiro, Mucio Flavio, Grubhoffer, Libor, Passos, L.M.F.   +65 more
core   +1 more source

A Protein Sequence Analysis Hardware Accelerator Based on Divergences

International Journal of Reconfigurable Computing, 2012
The Viterbi algorithm is one of the most used dynamic programming algorithms for protein comparison and identification, based on hidden markov Models (HMMs).
Juan Fernando Eusse, Nahri Moreano, Alba Cristina Magalhaes Alves de Melo, Ricardo Pezzuol Jacobi   +3 more
doaj   +1 more source

Sequence and Structure-Based Analysis of Specificity Determinants in Eukaryotic Protein Kinases

Cell Reports, 2021
Summary: Protein kinases lie at the heart of cell-signaling processes and are often mutated in disease. Kinase target recognition at the active site is in part determined by a few amino acids around the phosphoacceptor residue. However, relatively little
David Bradley, Cristina Viéitez, Vinothini Rajeeve, Joel Selkrig, Pedro R. Cutillas, Pedro Beltrao   +5 more
doaj   +1 more source