Results 91 to 100 of about 1,212,393 (317)

Structural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3

, 2009
The CUG-binding protein 1 (CUG-BP1) is a member of the CUG-BP1 and ETR-like factors (CELF) family or the Bruno-like family and is involved in the control of splicing, translation and mRNA degradation.
Kanako Kuwasako, Naohiro Kobayashi, Shirouzu, Mikako, Mari Takahashi, Yutaka Muto, Takahashi, Mari, Someya, Tatsuhiko, Takanori Kigawa, Kengo Tsuda, Kuwasako, Kanako, Kobayashi, Naohiro, Peter Güntert, Mikako Shirouzu, Muto, Yutaka, Sugano, Sumio, Akiko Tanaka, Tatsuhiko Someya, Makoto Inoue, Sumio Sugano, Terada, Takaho, Inoue, Makoto, Kigawa, Takanori, Yokoyama, Shigeyuki, Tsuda, Kengo, Takaho Terada, Shigeyuki Yokoyama, Tanaka, Akiko, Güntert, Peter   +27 more
core   +1 more source

Microarray analysis of defined Mycobacterium tuberculosis populations using RNA amplification strategies. [PDF]

, 2008
BACKGROUND: The amplification of bacterial RNA is required if complex host-pathogen interactions are to be studied where the recovery of bacterial RNA is limited.
Laing Ken, Waddell, SJ, Butcher, PD, Senner Claire, Simon Waddell (4462816), Ken Laing, Laing, K, Ken Laing (173955), Philip D Butcher, Waddell Simon J, Butcher Philip D, Claire Senner (44405), Simon J Waddell, Claire Senner, Senner, C, Philip D Butcher (16047203)   +15 more
core   +1 more source

Circular RNA expression landscapes in myelodysplastic neoplasms: Associations with mutational signatures and disease progression

Molecular Oncology, EarlyView.
In this explorative study, the abundance of circular RNA molecules in bone marrow stem cells was found to be elevated in patients with high‐risk myelodysplastic neoplasms, and to be associated with an increased risk of progression to acute myeloid leukemia.
Eileen Wedge, Morten Tulstrup, Gabriele Todisco, Pedro Moura, Christophe Côme, Jakob Werner Hansen, Jakob Schmidt Jespersen, Balthasar Schlotmann, Maria Creignou, Mette Dahl, Claudia Schöllkopf, Klas Raaschou‐Jensen, Krister Wennerberg, Bo Porse, Joachim Weischenfeldt, Eva Hellström‐Lindberg, Lasse Sommer Kristensen, Kirsten Grønbæk   +17 more
wiley   +1 more source

Subtype‐specific enhancer RNAs define transcriptional regulators and prognosis in breast cancers

Molecular Oncology, EarlyView.
This study employed machine learning methodologies to perform the subtype‐specific classification of RNA‐seq data sets, which are mapped on enhancers from TCGA‐derived breast cancer patients. Their integration with gene expression (referred to as ProxCReAM eRNAs) and chromatin accessibility profiles has the potential to identify lineage‐specific and ...
Aamena Y. Patel, Peyman Zarrineh, Nathnael T. Tuffa, Jigar H. Sheth, Sumitra Mohan, Mudassar Iqbal, Sankari Nagarajan   +6 more
wiley   +1 more source

XML schemas for common bioinformatic data types and their application in workflow systems

, 2006
Seibel PN, Krüger J, Hartmeier S, et al. XML schemas for common bioinformatic data types and their application in workflow systems. BMC Bioinformatics.
Krüger, Jan, Seibel Philipp N, Sven Hartmeier, Krüger Jan, Giegerich, R., Philipp N Seibel, Hartmeier Sven, Schwarzer Knut, Henning Mersch, Schwarzer, Knut, Seibel, Philipp N., Knut Schwarzer, Löwenthal Kai, Krüger, J., Dandekar, Th., Robert Giegerich, Giegerich, Robert, Jan Krüger, Dandekar, Thomas, Löwenthal, Kai, Mersch Henning, Hartmeier, S., Thomas Dandekar, Seibel, P. N., Krueger, Jan, Mersch, Henning, Löwenthal, K., Kai Löwenthal, Giegerich Robert, Schwarzer, K., Dandekar Thomas, Hartmeier, Sven, Mersch, H.   +32 more
core   +1 more source

Generation and characterization of a recombinant Rift Valley fever virus expressing a V5 epitope-tagged RNA-dependent RNA polymerase [PDF]

, 2011
The viral RNA-dependent RNA polymerase (RdRp; L protein) of Rift Valley fever virus (RVFV; family Bunyaviridae) is a 238 kDa protein that is crucial for the life cycle of the virus, as it catalyses both transcription of viral mRNAs and replication of the
Brennan, Benjamin, Richard M. Elliott, Li, Ping, Ping Li, Elliott, Richard M., Benjamin Brennan   +5 more
core   +1 more source

Network divergence analysis identifies adaptive gene modules and two orthogonal vulnerability axes in pancreatic cancer

Molecular Oncology, EarlyView.
Tumors contain diverse cellular states whose behavior is shaped by context‐dependent gene coordination. By comparing gene–gene relationships across biological contexts, we identify adaptive transcriptional modules that reorganize into distinct vulnerability axes.
Brian Nelson, Lyanne Delgado‐Coka, Natalia Marchenko, Luisa F. Escobar‐Hoyos, Kenneth R. Shroyer, Alisa Yurovsky, Trey Ideker, Gábor Balázsi, Thomas MacCarthy, Scott Powers   +9 more
wiley   +1 more source

RNAome sequencing delineates the complete RNA landscape

Genomics Data, 2015
Standard RNA expression profiling methods rely on enrichment steps for specific RNA classes, thereby not detecting all RNA species. For example, small and large RNAs from the same sample cannot be sequenced in a single sequence run.
Kasper W.J. Derks, Joris Pothof
doaj   +1 more source

COMP–PMEPA1 axis promotes epithelial‐to‐mesenchymal transition in breast cancer cells

Molecular Oncology, EarlyView.
This study reveals that cartilage oligomeric matrix protein (COMP) promotes epithelial‐to‐mesenchymal transition (EMT) in breast cancer. We identify PMEPA1 (protein TMEPAI) as a novel COMP‐binding partner that mediates EMT via binding to the TSP domains of COMP, establishing the COMP–PMEPA1 axis as a key EMT driver in breast cancer.
Konstantinos S. Papadakos, Gilar Gorji‐bahri, Lejla Gradjan, Julia Zajac, Kacper Gil, Yvonne Thokozile Nduku, Anna M. Blom   +6 more
wiley   +1 more source

4SALE – A tool for synchronous RNA sequence and secondary structure alignment and editing

BMC Bioinformatics, 2006
Background In sequence analysis the multiple alignment builds the fundament of all proceeding analyses. Errors in an alignment could strongly influence all succeeding analyses and therefore could lead to wrong predictions.
Schultz Jörg, Dandekar Thomas, Müller Tobias, Seibel Philipp N, Wolf Matthias   +4 more
doaj   +1 more source