Results 281 to 290 of about 1,215,770 (317)
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RNA Sequences Similarities Analysis by Inner Products
2015According to 2-D chaos game representation of RNA secondary structures, we propose a new method of 3-D graphical representation which does not lose any biological information. Then we extract a new numerical feature which called inner products from 3-D graphical representation. It is regarded as a value to analyze the relationship between nine kinds of
Shanshan Xing +3 more
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Massively Parallel Analysis of Regulatory RNA Sequences
2021The stability of RNA transcripts is regulated by signals within their sequences, but the identity of those signals still remain elusive in many biological systems. Recently introduced massively parallel tools for the analysis of regulatory RNA sequences provide the ability to detect functional cis-regulatory sequences of post-transcriptional RNA ...
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Bioinformatic Analysis of Small RNA Sequencing Libraries
2019Bioinformatic analysis of small RNA sequencing libraries consists of transforming a series of small RNA sequencing experiment fastq files into a table containing small RNA sequences and their abundance. This is achieved by cleaning the reads, aligning the cleaned reads to a reference, and parsing the alignment results.
Ricardo A, Chávez Montes +2 more
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Vaccinia Virus Transcriptome Analysis by RNA Sequencing
2019RNA-sequencing (RNA-Seq) using next-generation sequencing (NGS) technique is a powerful tool for simultaneous analysis of global transcripts from both vaccinia virus and host cell. Here, we describe an RNA-Seq method for analyzing the vaccinia virus transcriptome from virus-infected HeLa cells.
Shuai, Cao, Yongquan, Lin, Zhilong, Yang
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Analysis of RNA Sequences and Modifications Using NASE
2023Mass spectrometry is an ideal method for the discovery and characterization of modified RNAs. Unlike other traditional sequencing methods, mass spectrometry can identify and localize multiple types of modifications in tandem. One of the traditional hurdles to using this powerful technique has been a paucity of software to interpret the complicated data
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Analysis of AmpliSeq RNA-Sequencing Enrichment Panels
2015This study presents a proof of concept of encoding genomic signatures in the AmpliSeq technology. The samples of patients with a disease and healthy ones have been processed using an AmpliSeq RNA sequencing kit of a custom design, that include 290 amplicons, sequenced using an IonTorrent machine. The read count data show the sufficient coverage in most
Marek S. Wiewiórka +2 more
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Borrelia burgdorferi Transcriptome Analysis by RNA-Sequencing
2017Next-Generation Sequencing (NGS) has revolutionized transcriptomics studies in the last decade. Transcriptome analysis experiments using NGS-based RNA-sequencing have several advantages over DNA microarray analysis. Novel unannotated transcripts and transcriptional start sites can be identified.
M, Lybecker, K C, Henderson
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RNA Sequencing: From Sample Preparation to Analysis
2014The introduction of RNA sequencing (RNA-seq), as a direct result of rapid progression of next-generation sequencing technologies, has revolutionized the world of transcriptomics. It enables quantification of the complete set of RNA with all its isoforms in a given cell, in far greater accuracy than before.
Sho, Maekawa +3 more
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Analysis of ribosomal RNA sequences by combinatorial clustering.
Proceedings. International Conference on Intelligent Systems for Molecular Biology, 2000We present an analysis of multi-aligned eukaryotic and procaryotic small subunit rRNA sequences using a novel segmentation and clustering procedure capable of extracting subsets of sequences that share common sequence features. This procedure consists of: i) segmentation of aligned sequences using a dynamic programming procedure, and subsequent ...
Poe Xing +6 more
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Pichia pastoris RNA-Sequencing and Data Analysis
RNA sequencing (RNA-seq) allows for transcriptome profiling, usually with the goal of comparing the gene expression between conditions of interest. Transcriptome profiling helped to understand and improve the use of microbes in industrial processes, as exemplified numerous times for the biotechnologically relevant yeast Komagataella phaffii.Julian Christopher, Krappinger +4 more
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