Results 281 to 290 of about 24,849,508 (311)

Differential analysis of rna methylation sequencing data

2013 IEEE Global Conference on Signal and Information Processing, 2013
Recently, a new technique, combining Methylated RNA Immunoprecipatation with RNA sequencing (MeRIP-Seq), was developed and applied to survey the global mRNA N6-methyladenosine (m6A) methylation in mammalian cells. MeRIP-Seq has the potential to survey, for the first time, the transcriptome-wide distribution of different types of post-transcriptional ...
Xiaodong Cui, Jia Meng 0001, Manjeet K. Rao, Yidong Chen 0002, Yufei Huang 0001   +4 more
openaire   +2 more sources

RNA Sequencing: From Sample Preparation to Analysis

2014
The introduction of RNA sequencing (RNA-seq), as a direct result of rapid progression of next-generation sequencing technologies, has revolutionized the world of transcriptomics. It enables quantification of the complete set of RNA with all its isoforms in a given cell, in far greater accuracy than before.
Sho, Maekawa, Ayako, Suzuki, Sumio, Sugano, Yutaka, Suzuki   +3 more
openaire   +2 more sources

Analysis of ribosomal RNA sequences by combinatorial clustering.

Proceedings. International Conference on Intelligent Systems for Molecular Biology, 2000
We present an analysis of multi-aligned eukaryotic and procaryotic small subunit rRNA sequences using a novel segmentation and clustering procedure capable of extracting subsets of sequences that share common sequence features. This procedure consists of: i) segmentation of aligned sequences using a dynamic programming procedure, and subsequent ...
Poe Xing, Casimir A. Kulikowski, Ilya B. Muchnik, Inna Dubchak, Denise M. Wolf, Sylvia Spengler, Manfred Zorn   +6 more
openaire   +2 more sources

Bioinformatic Analysis of Small RNA Sequencing Libraries

2019
Bioinformatic analysis of small RNA sequencing libraries consists of transforming a series of small RNA sequencing experiment fastq files into a table containing small RNA sequences and their abundance. This is achieved by cleaning the reads, aligning the cleaned reads to a reference, and parsing the alignment results.
Ricardo A, Chávez Montes, Fabiola, Jaimes-Miranda, Stefan, de Folter   +2 more
openaire   +2 more sources

RNA 5-Methylcytosine Analysis by Bisulfite Sequencing

2015
Cells have developed molecular machineries, which can chemically modify DNA and RNA nucleosides. One particular and chemically simple modification, (cytosine-5) methylation (m(5)C), has been detected both in RNA and DNA suggesting universal use of m(5)C for the function of these nucleotide polymers.
openaire   +2 more sources

High-throughput biochemistry in RNA sequence space: predicting structure and function

Nature Reviews Genetics, 2023
Emil Marklund, William Greenleaf, Yuxi Ke   +2 more
exaly  

RNA sequencing and transcriptome analysis

2020
Elizabeth D. Au, Michael H. Farkas
openaire   +1 more source

Pichia pastoris RNA-Sequencing and Data Analysis

RNA sequencing (RNA-seq) allows for transcriptome profiling, usually with the goal of comparing the gene expression between conditions of interest. Transcriptome profiling helped to understand and improve the use of microbes in industrial processes, as exemplified numerous times for the biotechnologically relevant yeast Komagataella phaffii.
Julian Christopher, Krappinger, Astrid, Radkohl, Veronika, Schusterbauer, Anita, Emmerstorfer-Augustin, Julia, Feichtinger   +4 more
openaire   +2 more sources

RNA-Sequencing and Methylome Analysis

2015
Shamika Ketkar, Shashikant Kulkarni
openaire   +1 more source

Emerging Roles of Disordered Sequences in RNA-Binding Proteins

Trends in Biochemical Sciences, 2015
Stéphane Richard
exaly