Results 41 to 50 of about 24,849,508 (311)
Shape based indexing for faster search of RNA family databases [PDF]
, 2008 Janssen S, Reeder J, Giegerich R. Shape based indexing for faster search of RNA family databases. BMC Bioinformatics. 2008;9(1):131.Background: Most non-coding RNA families exert their function by means of a conserved, common secondary structure.
Janssen Stefan +5 more
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A Beginner’s Guide to Analysis of RNA Sequencing Data [PDF]
American Journal of Respiratory Cell and Molecular Biology, 2018 Abstract Since the first publications coining the term RNA-seq (RNA sequencing) appeared in 2008, the number of publications containing RNA-seq data has grown exponentially, hitting an all-time high of 2,808 publications in 2016 (PubMed).
Clarissa M, Koch +6 more
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Review of RNA sequence of pX330-U6
, 2021 RNA sequencing can be used for studying various factors such as mRNA including single cell gene expression. For more than 10 years RNA sequencing has become vital means for wide analysis of gene expression and differential splicing of mRNAs.
Mitra, Manu
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HeliyonDeciphering information of RNA sequences reveals their diverse roles in living organisms, including gene regulation and protein synthesis. Aberrations in RNA sequence such as dysregulation and mutations can drive a diverse spectrum of diseases including ...
Muhammad Nabeel Asim +3 more
doaj +1 more source
DNApi: A De Novo Adapter Prediction Algorithm for Small RNA Sequencing Data. [PDF]
PLoS ONE, 2016 With the rapid accumulation of publicly available small RNA sequencing datasets, third-party meta-analysis across many datasets is becoming increasingly powerful.
Junko Tsuji, Zhiping Weng
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陆军军医大学学报Objective To analyze the composition characteristics and biological functions of tumor cell subpopulations in glioblastoma (GBM) through multi-transcriptomics sequencing technology, and explore the hypoxia characteristics and spatial localization ...
CHEN Tao, YANG Fan, WANG Shuai
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RNA-sequence analysis of human B-cells [PDF]
Genome Research, 2011 RNA-sequencing (RNA-seq) allows quantitative measurement of expression levels of genes and their transcripts. In this study, we sequenced complementary DNA fragments of cultured human B-cells and obtained 879 million 50-bp reads comprising 44 Gb of sequence.
Jonathan M, Toung +3 more
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Computational discovery of animal small RNA genes and targets [PDF]
, 2007 Though recently discovered, small RNAs appear to play a wealth of regulatory roles, being involved in degradation of target mRNAs, translation silencing of target genes, chromatin remodeling and transposon silencing.
Gaidatzis, Dimosthenis
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Protocol for identifying differentially expressed genes using the RumBall RNA-seq analysis platform
STAR ProtocolsSummary: Here, we present a protocol for the identification of differentially expressed genes through RNA sequencing analysis. Starting with FASTQ files from public datasets, this protocol leverages RumBall within a self-contained Docker system.
Luis Augusto Eijy Nagai +2 more
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Analysis of Small RNA Sequencing Data in Plants [PDF]
, 2022 AbstractOver the past decades, next-generation sequencing (NGS) has been employed extensively for investigating the regulatory mechanisms of small RNAs. Several bioinformatics tools are available for aiding biologists to extract meaningful information from enormous amounts of data generated by NGS platforms.
Garg, V., Varshney, R.K.
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