Results 11 to 20 of about 29,786,749 (389)

Sequence Analysis

Definitions, 2020
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Leena Salmela, Eric Rivals
semanticscholar   +2 more sources

Search and sequence analysis tools services from EMBL-EBI in 2022

Nucleic Acids Res., 2022
The EMBL-EBI search and sequence analysis tools frameworks provide integrated access to EMBL-EBI’s data resources and core bioinformatics analytical tools.
F. Madeira, Matt Pearce, A. Tivey, Prasad Basutkar, Joon Lee, Ossama Edbali, Nandana Madhusoodanan, A. Kolesnikov, R. Lopez   +8 more
semanticscholar   +1 more source

GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis [PDF]

Micro, 2020
Genome sequence analysis has enabled significant advancements in medical and scientific areas such as personalized medicine, outbreak tracing, and the understanding of evolution.
Damla Senol Cali, G. Kalsi, Z. Bingöl, Can Firtina, Lavanya Subramanian, Jeremie S. Kim, Rachata Ausavarungnirun, M. Alser, Juan Gómez-Luna, Amirali Boroumand, Anant V. Nori, Allison Scibisz, S. Subramoney, C. Alkan, Saugata Ghose, O. Mutlu   +15 more
semanticscholar   +1 more source

Representation learning applications in biological sequence analysis

bioRxiv, 2021
Remarkable advances in high-throughput sequencing have resulted in rapid data accumulation, and analyzing biological (DNA/RNA/protein) sequences to discover new insights in biology has become more critical and challenging.
Hitoshi Iuchi, Taro Matsutani, Keisuke Yamada, Natsuki Iwano, Shunsuke Sumi, S. Hosoda, Shitao Zhao, Tsukasa Fukunaga, Michiaki Hamada   +8 more
semanticscholar   +1 more source

Protein Sequence Analysis Using the MPI Bioinformatics Toolkit

Current Protocols in Bioinformatics, 2020
The MPI Bioinformatics Toolkit (https://toolkit.tuebingen.mpg.de) provides interactive access to a wide range of the best‐performing bioinformatics tools and databases, including the state‐of‐the‐art protein sequence comparison methods HHblits and HHpred.
Felix Gabler, Seung-Zin Nam, S. Till, M. Mirdita, Martin Steinegger, J. Söding, A. Lupas, V. Alva   +7 more
semanticscholar   +1 more source

The EMBL-EBI search and sequence analysis tools APIs in 2019

Nucleic Acids Res., 2019
The EMBL-EBI provides free access to popular bioinformatics sequence analysis applications as well as to a full-featured text search engine with powerful cross-referencing and data retrieval capabilities.
F. Madeira, Y. M. Park, Joon Lee, Nicola Buso, Tamer Gur, Nandana Madhusoodanan, Prasad Basutkar, A. Tivey, Simon C. Potter, R. Finn, R. Lopez   +10 more
semanticscholar   +1 more source

The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024. [PDF]

Nucleic Acids Res
The EMBL-EBI Job Dispatcher sequence analysis tools framework (https://www.ebi.ac.uk/jdispatcher) enables the scientific community to perform a diverse range of sequence analyses using popular bioinformatics applications.
Madeira F, Madhusoodanan N, Lee J, Eusebi A, Niewielska A, Tivey ARN, Lopez R, Butcher S.   +7 more
europepmc   +2 more sources

Sequence complexity for biological sequence analysis [PDF]

Computers & Chemistry, 2000
A new statistical model for DNA considers a sequence to be a mixture of regions with little structure and regions that are approximate repeats of other subsequences, i.e. instances of repeats do not need to match each other exactly. Both forward- and reverse-complementary repeats are allowed.
Lloyd Allison, Timothy C Edgoose, Trevor I. Dix, Linda Stern   +3 more
openaire   +3 more sources

Differential expression analysis for sequence count data [PDF]

, 2010
*Motivation:* High-throughput nucleotide sequencing provides quantitative readouts in assays for RNA expression (RNA-Seq), protein-DNA binding (ChIP-Seq) or cell counting (barcode sequencing).
A Agresti, A Mortazavi, AC Cameron, AM Smith, AS Morrissy, B Langmead, C Loader, CI Bliss, DD Licatalosi, G Robertson, GK Smyth, GK Smyth, I Lönnstedt, J Bullard, JC Marioni, JF Lawless, JS Bloom, K Saha, L Wang, L Whitaker, M Kasowski, MD Robinson, MD Robinson, MD Robinson, MD Robinson, P Engström, P McCullagh, RC Gentleman, Simon Anders, SJ Clark, U Nagalakshmi, Wolfgang Huber, Y Benjamini   +32 more
core   +3 more sources

A comprehensive set of sequence analysis programs for the VAX

Nucleic Acids Res., 1984
The University of Wisconsin Genetics Computer Group (UWGCG) has been organized to develop computational tools for the analysis and publication of biological sequence data.
J. Devereux, P. Haeberli, O. Smithies
semanticscholar   +1 more source