Results 1 to 10 of about 4,125,791 (291)
Pairwise sequence comparison data of the DNA barcodes of aquatic insects [PDF]
Data in Brief, 2020 This study compared the DNA sequences of cytochrome coxidase subunit I (COI) and histone H3 of Ephemeroptera, Odonata, Plecoptera, and Trichoptera in a pairwise manner, and calculated the sequence similarities based on uncorrected P-distance (number of ...
Koji Inai, Kei Wakimura, Mikio Kato
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Understanding the Genetic Diversity of Picobirnavirus: A Classification Update Based on Phylogenetic and Pairwise Sequence Comparison Approaches [PDF]
Viruses, 2021 Picobirnaviruses (PBVs) are small, double stranded RNA viruses with an ability to infect a myriad of hosts and possessing a high degree of genetic diversity. PBVs are currently classified into two genogroups based upon classification of a 200 nt sequence
Lester J. Perez +2 more
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A biological sequence comparison algorithm using quantum computers [PDF]
Scientific Reports, 2023 Genetic information is encoded as linear sequences of nucleotides, represented by letters ranging from thousands to billions. Differences between sequences are identified through comparative approaches like sequence analysis, where variations can occur ...
Büsra Kösoglu-Kind +5 more
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Sequence Comparison of Vaginolysin from Different Gardnerella Species [PDF]
Pathogens, 2021 Gardnerella vaginalis has recently been split into 13 distinct species. In this study, we tested the hypotheses that species-specific variations in the vaginolysin (VLY) amino acid sequence could influence the interaction between the toxin and vaginal ...
Erin M. Garcia +5 more
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Benchmarking of alignment-free sequence comparison methods [PDF]
Genome Biology, 2019 Background Alignment-free (AF) sequence comparison is attracting persistent interest driven by data-intensive applications. Hence, many AF procedures have been proposed in recent years, but a lack of a clearly defined benchmarking consensus hampers their
Andrzej Zielezinski +18 more
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Alignment-free sequence comparison: benefits, applications, and tools [PDF]
Genome Biology, 2017 Alignment-free sequence analyses have been applied to problems ranging from whole-genome phylogeny to the classification of protein families, identification of horizontally transferred genes, and detection of recombined sequences.
Andrzej Zielezinski +3 more
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Circular sequence comparison: algorithms and applications. [PDF]
Algorithms Mol Biol, 2016 Sequence comparison is a fundamental step in many important tasks in bioinformatics; from phylogenetic reconstruction to the reconstruction of genomes. Traditional algorithms for measuring approximation in sequence comparison are based on the notions of distance or similarity, and are generally computed through sequence alignment techniques.
Grossi R +6 more
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Multiple alignment-free sequence comparison. [PDF]
Bioinformatics, 2013 Abstract Motivation: Recently, a range of new statistics have become available for the alignment-free comparison of two sequences based on k-tuple word content. Here, we extend these statistics to the simultaneous comparison of more than two sequences.
Ren J, Song K, Sun F, Deng M, Reinert G.
europepmc +5 more sources
Frontiers in Allergy, 2022 Celiac disease (CeD) is an autoimmune enteropathy induced by prolamin and glutelin proteins in wheat, barley, rye, and triticale recognized by genetically restricted major histocompatibility (MHC) receptors.
Plaimein Amnuaycheewa +7 more
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Pairwise Heuristic Sequence Alignment Algorithm Based on Deep Reinforcement Learning
IEEE Open Journal of Engineering in Medicine and Biology, 2021 Goal: Various methods have been developed to analyze the association between organisms and their genomic sequences. Among them, sequence alignment is the most frequently used method for comparative analysis of biological genomes.
Yong-Joon Song +4 more
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