Results 11 to 20 of about 4,125,791 (291)
Toward Efficient Similarity Search under Edit Distance on Hybrid Architectures
Information, 2022 Edit distance is the most widely used method to quantify similarity between two strings. We investigate the problem of similarity search under edit distance.
Madiha Khalid +2 more
doaj +1 more source
q-gram analysis and urn models [PDF]
Discrete Mathematics & Theoretical Computer Science, 2003 Words of fixed size q are commonly referred to as $q$-grams. We consider the problem of $q$-gram filtration, a method commonly used to speed upsequence comparison. We are interested in the statistics of the number of $q$-grams common to two random texts (
Pierre Nicodème
doaj +1 more source
Local Alignment of DNA Sequence Based on Deep Reinforcement Learning
IEEE Open Journal of Engineering in Medicine and Biology, 2021 Goal: Over the decades, there have been improvements in the sequence alignment algorithm, with significant advances in various aspects such as complexity and accuracy. However, human-defined algorithms have an explicit limitation in view of developmental
Yong-Joon Song, Dong-Ho Cho
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Pathogens, 2023 A novel Babesia sp. infecting goats was discovered based on the molecular findings obtained in the current study, which was conducted in the Mediterranean region of Türkiye.
Sezayi Ozubek +2 more
doaj +1 more source
Formal inverses of the generalized Thue-Morse sequences and variations of the Rudin-Shapiro sequence [PDF]
, 2020 A formal inverse of a given automatic sequence (the sequence of coefficients of the composition inverse of its associated formal power series) is also automatic.
Merta, Łukasz
core +2 more sources
Frontiers in Allergy, 2021 Motivation: The availability of databases identifying allergenic proteins via a transparent and consensus-based scientific approach is of prime importance to support the safety review of genetically-modified foods and feeds, and public safety in general.
Ronald van Ree +24 more
doaj +1 more source
Biomedical and Biotechnology Research Journal, 2023 Background: Bruguiera hainesii C.G. Rogers 1919, a true mangrove tree is a critically endangered species (CR) in Vietnam. This species is restricted to the Con Dao National Park, Ba Ria-Vung Tau province, where it occurs in very tiny populations. However,
Viet Ha Tran +5 more
doaj +1 more source
Finite width model sequence comparison [PDF]
Physical Review E, 2004 Sequence comparison is a widely used computational technique in modern molecular biology. In spite of the frequent use of sequence comparisons the important problem of assigning statistical significance to a given degree of similarity is still outstanding.
Bundschuh, Ralf, Chia, Nicholas
openaire +3 more sources
Draft Genome Sequence of the Serratia rubidaea CIP 103234T Reference Strain, a Human-Opportunistic Pathogen. [PDF]
, 2015 We provide here the first genome sequence of a Serratia rubidaea isolate, a human-opportunistic pathogen.
Bonnin, RA +4 more
core +1 more source
Gammaherpesvirus Sequence Comparisons [PDF]
Journal of Virology, 1998 In the December 1997 issue, a report by Desrosiers et al. (2) described a novel herpesvirus in rhesus macaques (named RRV for rhesus rhadinovirus) with similarity to human herpesvirus 8 (HHV-8 or KSHV for Kaposi’s sarcoma-associated herpesvirus).
Marnix L. Bosch +2 more
openaire +1 more source