MSDB: A Comprehensive Database of Simple Sequence Repeats [PDF]
Genome Biology and Evolution, 2017 Microsatellites, also known as Simple Sequence Repeats (SSRs), are short tandem repeats of 1-6 nt motifs present in all genomes, particularly eukaryotes. Besides their usefulness as genome markers, SSRs have been shown to perform important regulatory functions, and variations in their length at coding regions are linked to several disorders in humans ...
Divya Tej Sowpati +2 more
exaly +5 more sources
TriticeaeSSRdb: a comprehensive database of simple sequence repeats in Triticeae [PDF]
Frontiers in Plant ScienceMicrosatellites, known as simple sequence repeats (SSRs), are short tandem repeats of 1 to 6 nucleotide motifs found in all genomes, particularly eukaryotes.
Tingting Li +11 more
doaj +4 more sources
Genome-Wide Analysis of Simple Sequence Repeats in Cabbage (Brassica oleracea L.) [PDF]
Frontiers in Plant Science, 2021 Cabbage (Brassica oleracea L. var. capitata) accounts for a critical vegetable crop belonging to Brassicaceae family, and it has been extensively planted worldwide.
Yuanyuan Xu +5 more
doaj +2 more sources
Evolution Analysis of Simple Sequence Repeats in Plant Genome. [PDF]
PLoS ONE, 2015 Simple sequence repeats (SSRs) are widespread units on genome sequences, and play many important roles in plants. In order to reveal the evolution of plant genomes, we investigated the evolutionary regularities of SSRs during the evolution of plant ...
Zhen Qin +5 more
doaj +4 more sources
Assessment of simple sequence repeats signature in hepatitis E virus (HEV) genomes [PDF]
Journal of Genetic Engineering and Biotechnology, 2022 Background Hepatitis E virus (HEV) is small (27–34 nm diameter) non-enveloped with positive sense ssRNA genome. Microsatellites or simple sequence repeats (SSR) are short tandem repeat sequences present across coding and non-coding regions of both ...
Md Gulam Jilani, Safdar Ali
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Genome-wide simple sequence repeats (SSR) markers discovered from whole-genome sequence comparisons of multiple spinach accessions [PDF]
Scientific Reports, 2021 The availability of well-assembled genome sequences and reduced sequencing costs have enabled the resequencing of many additional accessions in several crops, thus facilitating the rapid discovery and development of simple sequence repeat (SSR) markers ...
Gehendra Bhattarai +5 more
doaj +2 more sources
The Cipher Code of Simple Sequence Repeats in "Vampire Pathogens". [PDF]
Sci Rep, 2015 Abstract Blood inside mammals is a forbidden area for the majority of prokaryotic microbes; however, red blood cells tropism microbes, like “vampire pathogens” (VP), succeed in matching scarce nutrients and surviving strong immunity reactions. Here, we found VP of Mycoplasma
Zou G +8 more
europepmc +7 more sources
Genome-Wide Analysis of Simple Sequence Repeats in Bitter Gourd (Momordica charantia) [PDF]
Frontiers in Plant Science, 2017 Bitter gourd (Momordica charantia) is widely cultivated as a vegetable and medicinal herb in many Asian and African countries. After the sequencing of the cucumber (Cucumis sativus), watermelon (Citrullus lanatus), and melon (Cucumis melo) genomes ...
Junjie Cui +8 more
doaj +2 more sources
GenoSSRFinder: a tool for rapid, precise, and targeted simple sequence repeat detection in genomic studies [PDF]
Brazilian Journal of Biology, 2023 The GenoSSRFinder is a new tool enables the research of Simple Sequence Repeats (SSRs) in DNA sequences and genomes much simpler and more precise in short time. The analysis is carried out by targeting a certain SSR in genome and gene sequences.
M. Alhawatema
doaj +1 more source
Journal of Insect Science, 2001 PCR-based molecular markers are well suited for questions requiring large scale surveys of plant and animal populations. Inter-simple Sequence Repeats or ISSRs are analyzed by a recently developed technique based on the amplification of the regions ...
Patrick Abbot
doaj +2 more sources