Genome-Wide Analysis of Simple Sequence Repeats in Cabbage (Brassica oleracea L.) [PDF]
Frontiers in Plant Science, 2021 Cabbage (Brassica oleracea L. var. capitata) accounts for a critical vegetable crop belonging to Brassicaceae family, and it has been extensively planted worldwide.
Yuanyuan Xu +5 more
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TriticeaeSSRdb: a comprehensive database of simple sequence repeats in Triticeae [PDF]
Frontiers in Plant ScienceMicrosatellites, known as simple sequence repeats (SSRs), are short tandem repeats of 1 to 6 nucleotide motifs found in all genomes, particularly eukaryotes.
Tingting Li +11 more
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Simple sequence repeats drive genome plasticity and promote adaptive evolution in penaeid shrimp [PDF]
Communications Biology, 2021 This study focuses on the role of simple sequence repeats (SSRs) in the evolution of the genomes of two penaeid shrimp species, Fenneropenaeus chinensis and Litopenaeus vannamei.
Jianbo Yuan +15 more
doaj +2 more sources
Genome-wide simple sequence repeats (SSR) markers discovered from whole-genome sequence comparisons of multiple spinach accessions [PDF]
Scientific Reports, 2021 The availability of well-assembled genome sequences and reduced sequencing costs have enabled the resequencing of many additional accessions in several crops, thus facilitating the rapid discovery and development of simple sequence repeat (SSR) markers ...
Gehendra Bhattarai +5 more
doaj +2 more sources
Genome-Wide Analysis of Simple Sequence Repeats in Bitter Gourd (Momordica charantia) [PDF]
Frontiers in Plant Science, 2017 Bitter gourd (Momordica charantia) is widely cultivated as a vegetable and medicinal herb in many Asian and African countries. After the sequencing of the cucumber (Cucumis sativus), watermelon (Citrullus lanatus), and melon (Cucumis melo) genomes ...
Junjie Cui +8 more
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GenoSSRFinder: a tool for rapid, precise, and targeted simple sequence repeat detection in genomic studies [PDF]
Brazilian Journal of Biology, 2023 The GenoSSRFinder is a new tool enables the research of Simple Sequence Repeats (SSRs) in DNA sequences and genomes much simpler and more precise in short time. The analysis is carried out by targeting a certain SSR in genome and gene sequences.
M. Alhawatema
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Forest Systems, 2023 Aim of study: To characterize and compare the genetic resources and gain some insights into the evolutionary history of Aleppo pine (Pinus halepensis Mill.) and Brutia pine (Pinus brutia Ten.) species which are both distributed across more than 8 ...
Yusuf KURT +5 more
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Evolution Analysis of Simple Sequence Repeats in Plant Genome. [PDF]
PLoS ONE, 2015 Simple sequence repeats (SSRs) are widespread units on genome sequences, and play many important roles in plants. In order to reveal the evolution of plant genomes, we investigated the evolutionary regularities of SSRs during the evolution of plant ...
Zhen Qin +5 more
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PhytoFrontiers, 2023 Columbia root-knot nematode, Meloidogyne chitwoodi, parasitizes potato plants and causes visible small brown dots in the tuber flesh that dramatically reduce the market value of the crop. In the Pacific Northwest, two races of M.
Shengwei Hu +10 more
doaj +1 more source
SSREnricher: a computational approach for large-scale identification of polymorphic microsatellites based on comparative transcriptome analysis [PDF]
PeerJ, 2020 Microsatellite (SSR) markers are the most popular markers for genetic analyses and molecular selective breeding in plants and animals. However, the currently available methods to develop SSRs are relatively time-consuming and expensive.
Wei Luo +7 more
doaj +2 more sources