Results 21 to 30 of about 93,598 (304)

The mitochondrial DNA markers for distinguishing Phalaenopsis species and revealing maternal phylogeny

Biologia Plantarum, 2016
Moth orchids (Phalaenopsis) are among the top-traded blooming potted plants in the world. To explore mitochondrial DNA (mtDNA) markers for species identification, we located simple sequence repeats in the mtDNA of Phalaenopsis aphrodite subsp.
B. -Y. Lin, C. -D. Chang, L. L. H. Huang, Y. -C. Liu, Y. -Y. Su, T. -C. Chen, R. -H. Lee, H. -J. Huang, W. -L. Wu, C. -C. Chang   +9 more
doaj   +1 more source

Survey and analysis of simple sequence repeats (SSRs) present in the genomes of plant viroids

FEBS Open Bio, 2014
Extensive simple sequence repeat (SSR) surveys have been performed for eukaryotic prokaryotic and viral genomes, but information regarding SSRs in viroids is limited. We undertook a survey to examine the presence of SSRs in viroid genomes.
Lü Qin, Zhixiang Zhang, Xiangyan Zhao, Xiaolong Wu, Yubao Chen, Zhongyang Tan, Shifang Li   +6 more
doaj   +1 more source

MultiplexSSR: A pipeline for developing multiplex SSR‐PCR assays from resequencing data

Ecology and Evolution, 2020
Next‐generation sequencing has greatly promoted the investigation of single nucleotide polymorphisms, while studies of simple sequence repeats are sharply decreasing. However, simple sequence repeats still present some advantages in conservation genetics.
Liang Guo, Quan Yang, Jing‐Wen Yang, Nan Zhang, Bao‐Suo Liu, Ke‐Cheng Zhu, Hua‐Yang Guo, Shi‐Gui Jiang, Dian‐Chang Zhang   +8 more
doaj   +1 more source

Mononucleotide repeats are asymmetrically distributed in fungal genes [PDF]

, 2008
Background Systematic analyses of sequence features have resulted in a better characterisation of the organisation of the genome. A previous study in prokaryotes on the distribution of sequence repeats, which are notoriously variable and can disrupt the ...
Graaff, L.H., de, de Graaff, L.H., van Passel Mark WJ, Passel, M.W.J., van, Mark WJ van Passel, Leo H de Graaff, van Passel, M.W.J., de Graaff Leo H   +7 more
core   +1 more source

Sequence characterization of hypervariable regions in the soybean genome: leucine-rich repeats and simple sequence repeats

Genetics and Molecular Biology, 2000
The genetic basis of cultivated soybean is rather narrow. This observation has been confirmed by analysis of agronomic traits among different genotypes, and more recently by the use of molecular markers.
Everaldo G. de Barros, Scott Tingey, J. Antoni Rafalski   +2 more
doaj   +1 more source

Intragenic tandem repeats in Daphnia magna: structure, function and distribution [PDF]

, 2009
Background Expressed sequence tag (EST) databases provide a valuable source of genetic data in organisms whose genome sequence information is not yet compiled.
Ebert, Dieter, Dieter Ebert, Du Pasquier Louis, Du Pasquier, L., Ebert Dieter, Colson, I., Colson Isabelle, Isabelle Colson, Louis Du Pasquier   +8 more
core   +1 more source

Simple sequence repeats.

, 2021
The number of each type of simple sequence repeats (SSRs) identified in each plastome using the MISA webserver (http://misaweb.ipk-gatersleben.de/). Penstemon fruticosus is included in this study as a reference for the basal clade of Penstemon.
Lindsey M. Meservey (11841092), L. Stephen Love (11841104), Jason M. Stettler (5488874), Jed D. Grow (11841098), W. Wesley Crump (11841095), Eric N. Jellen (8887364), Sydney J. Porter (11841101), Peter J. Maughan (8887367), Mikel R. Stevens (11841089)   +8 more
core   +1 more source

Genomic SSR marker development in lentil (Lens culinaris Medik.) and assessment of cross-species/genera transferability to related legumes

Czech Journal of Genetics and Plant Breeding, 2023
Simple sequence repeat (SSR) markers are valuable genetic and genomic research tools and are extensively used in major crops. However, a paucity of available molecular markers in lentils (Lens culinaris Medik.) has significantly hindered genomic studies ...
Melike Bakir, Şehriban Demir, Cebrail Yildirim, Abdullah Kahraman   +3 more
doaj   +1 more source

Simple sequence repeats in mycobacterial genomes

Journal of Biosciences, 2007
Simple sequence repeats (SSRs) or microsatellites are the repetitive nucleotide sequences of motifs of length 1-6 bp. They are scattered throughout the genomes of all the known organisms ranging from viruses to eukaryotes. Microsatellites undergo mutations in the form of insertions and deletions (INDELS) of their repeat units with some bias towards ...
Vattipally B, Sreenu, Pankaj, Kumar, Javaregowda, Nagaraju, Hampapathalu A, Nagarajam   +3 more
openaire   +2 more sources

Assessment of genetic diversity and relationships among Coix lacryma-jobi accessions using microsatellite markers

Biologia Plantarum, 2010
The present study describes the assessment of genetic diversity and relationships among 79 Job's tears (Coix lacrymajobi L.) accessions collected from China and Korea using 17 microsatellite markers. A total of 57 alleles were detected with an average of
K. -H. Ma, K. -H. Kim, A. Dixit, I. -M. Chung, J. -G. Gwag, T. -S. Kim, Y. -J. Park   +6 more
doaj   +1 more source