Results 11 to 20 of about 5,215,765 (304)

SSRD: simple sequence repeats database of the human genome [PDF]

Comparative and Functional Genomics, 2003
AbstractSimple sequence repeats are predominantly found in most organisms. They play a major role in studies of genetic diversity, and are useful as diagnostic markers for many diseases. The simple sequence repeats database (SSRD) for the human genome was created for easy access to such repeats, for analysis, and to be used to understand their ...
Subramanian, Subbaya, Madgula, Vamsi M, George, Ranjan, Kumar, Satish, Pandit, Madhusudhan W, Singh, Lalji   +5 more
openaire   +4 more sources

Simple sequence repeats in prokaryotic genomes [PDF]

Proceedings of the National Academy of Sciences, 2007
Simple sequence repeats (SSRs) in DNA sequences are composed of tandem iterations of short oligonucleotides and may have functional and/or structural properties that distinguish them from general DNA sequences. They are variable in length because of slip-strand mutations and may also affect local structure of the DNA molecule or ...
Jan, Mrázek, Xiangxue, Guo, Apurva, Shah   +2 more
openaire   +2 more sources

Optimization of sequence alignment for simple sequence repeat regions [PDF]

BMC Research Notes, 2011
Microsatellites, or simple sequence repeats (SSRs), are tandemly repeated DNA sequences, including tandem copies of specific sequences no longer than six bases, that are distributed in the genome. SSR has been used as a molecular marker because it is easy to detect and is used in a range of applications, including genetic diversity, genome mapping, and
Ogbonnaya Francis C, Hamwieh Aladdin, Jighly Abdulqader   +2 more
openaire   +3 more sources

MSDB: A Comprehensive Database of Simple Sequence Repeats. [PDF]

Genome Biol Evol, 2017
Microsatellites, also known as Simple Sequence Repeats (SSRs), are short tandem repeats of 1-6 nt motifs present in all genomes, particularly eukaryotes. Besides their usefulness as genome markers, SSRs have been shown to perform important regulatory functions, and variations in their length at coding regions are linked to several disorders in humans ...
Avvaru AK, Saxena S, Sowpati DT, Mishra RK.   +3 more
europepmc   +4 more sources

The mitochondrial DNA markers for distinguishing Phalaenopsis species and revealing maternal phylogeny

Biologia Plantarum, 2016
Moth orchids (Phalaenopsis) are among the top-traded blooming potted plants in the world. To explore mitochondrial DNA (mtDNA) markers for species identification, we located simple sequence repeats in the mtDNA of Phalaenopsis aphrodite subsp.
B. -Y. Lin, C. -D. Chang, L. L. H. Huang, Y. -C. Liu, Y. -Y. Su, T. -C. Chen, R. -H. Lee, H. -J. Huang, W. -L. Wu, C. -C. Chang   +9 more
doaj   +1 more source

Survey and analysis of simple sequence repeats (SSRs) present in the genomes of plant viroids

FEBS Open Bio, 2014
Extensive simple sequence repeat (SSR) surveys have been performed for eukaryotic prokaryotic and viral genomes, but information regarding SSRs in viroids is limited. We undertook a survey to examine the presence of SSRs in viroid genomes.
Lü Qin, Zhixiang Zhang, Xiangyan Zhao, Xiaolong Wu, Yubao Chen, Zhongyang Tan, Shifang Li   +6 more
doaj   +1 more source

MultiplexSSR: A pipeline for developing multiplex SSR‐PCR assays from resequencing data

Ecology and Evolution, 2020
Next‐generation sequencing has greatly promoted the investigation of single nucleotide polymorphisms, while studies of simple sequence repeats are sharply decreasing. However, simple sequence repeats still present some advantages in conservation genetics.
Liang Guo, Quan Yang, Jing‐Wen Yang, Nan Zhang, Bao‐Suo Liu, Ke‐Cheng Zhu, Hua‐Yang Guo, Shi‐Gui Jiang, Dian‐Chang Zhang   +8 more
doaj   +1 more source

ProRepeat: an integrated repository for studying amino acid tandem repeats in proteins [PDF]

, 2011
ProRepeat (http://prorepeat.bioinformatics.nl/) is an integrated curated repository and analysis platform for in-depth research on the biological characteristics of amino acid tandem repeats.
Harm Nijveen, Lin, K., Jack A. M. Leunissen, K. Lin, Audrey David, Luo, H., Ke Lin, A. David, David, A., H. Nijveen, H. Luo, Leunissen, J.A.M., Nijveen, H., Hong Luo, J. A. M. Leunissen   +14 more
core   +1 more source

Simple and flexible detection of contiguous repeats using a suffix tree [PDF]

, 2002
Stoye J, Gusfield D. Simple and flexible detection of contiguous repeats using a suffix tree. Theoretical Computer Science. 2002;270(1-2):843-856.We study the problem of detecting all occurrences of (primitive) tandem repeats and tandem arrays in a ...
Jens Stoye, Stoye, Jens ; https://orcid.org/, Gusfield, Dan, Dan Gusfield   +3 more
core   +1 more source

Simple sequence repeats.

, 2021
The number of each type of simple sequence repeats (SSRs) identified in each plastome using the MISA webserver (http://misaweb.ipk-gatersleben.de/). Penstemon fruticosus is included in this study as a reference for the basal clade of Penstemon.
Lindsey M. Meservey (11841092), L. Stephen Love (11841104), Jason M. Stettler (5488874), Jed D. Grow (11841098), W. Wesley Crump (11841095), Eric N. Jellen (8887364), Sydney J. Porter (11841101), Peter J. Maughan (8887367), Mikel R. Stevens (11841089)   +8 more
core   +1 more source