Results 41 to 50 of about 93,598 (304)

Genetic Diversity Among Ten Maize Genotypes Using Simple Sequence Repeat DNA Markers

Polytechnic Journal, 2021
Genetic diversity among ten maize genotypes (seven inbred lines and three testers) was investigated using ten simple sequence repeats (SSRs). Primers (bnlg128, bnlg1839, Umc1117, bnlg1144, and bnlg1152) generated the highest number of bands (4 bands) for
Sebar D. Abdulazeez, Sakar A. Kakarash, Namam B. Ismael   +2 more
doaj   +1 more source

Simple sequence repeat variation in the Daphnia pulex genome [PDF]

BMC Genomics, 2010
Simple sequence repeats (SSRs) are highly variable features of all genomes. Their rapid evolution makes them useful for tracing the evolutionary history of populations and investigating patterns of selection and mutation across genomes. The recently sequenced Daphnia pulex genome provides us with a valuable data set to study the mode and tempo of SSR ...
Sung, Way, Tucker, Abraham, Bergeron, R. Daniel, Lynch, Michael, Thomas, W. Kelley   +4 more
openaire   +4 more sources

Mining of simple sequence repeats in the Genome of Gentianaceae

Pharmacognosy Research, 2011
Simple sequence repeats (SSRs) or short tandem repeats are short repeat motifs that show high level of length polymorphism due to insertion or deletion mutations of one or more repeat types. Here, we present the detection and abundance of microsatellites or SSRs in nucleotide sequences of Gentianaceae family.
Sathishkumar, R., Lakshmi, P. T. V., Annamalai, A., Arunachalam, V.   +3 more
openaire   +3 more sources

Genetic diversity assessed by microsatellite markers in sweet corn cultivars

Scientia Agricola, 2015
Information on genetic diversity is essential to the characterization and utilization of germplasm. The genetic diversity of twenty-two sweet corn cultivars (seventeen open-pollinated varieties, OPV, and five hybrids, H) was investigated by applying ...
Ana Daniela Lopes, Carlos Alberto Scapim, Maria de Fátima Pires da Silva Machado, Claudete Aparecida Mangolin, Tereza Aparecida Silva, Liriana Belizário Cantagali, Flávia França Teixeira, Freddy Mora   +7 more
doaj   +1 more source

Epidemiologic Study of Vibrio vulnificus Infections by Using Variable Number Tandem Repeats

Emerging Infectious Diseases, 2009
A 3-year environmental and clinical Vibrio vulnificus survey using simple-sequence repeats typing shows that V. vulnificus biotype 3 constitutes ≈21% of the bacterium population in tested aquaculture ponds as opposed to ≈86% of clinical cases.
Yoav Y. Broza, Yael Danin-Poleg, Larisa Lerner, Lea Valinsky, Meir Broza, Yechezkel Kashi   +5 more
doaj   +1 more source

SSRMMD: A Rapid and Accurate Algorithm for Mining SSR Feature Loci and Candidate Polymorphic SSRs Based on Assembled Sequences

Frontiers in Genetics, 2020
Microsatellites or simple sequence repeats (SSRs) are short tandem repeats of DNA widespread in genomes and transcriptomes of diverse organisms and are used in various genetic studies.
Xiangjian Gou, Xiangjian Gou, Haoran Shi, Shifan Yu, Zhiqiang Wang, Caixia Li, Shihang Liu, Jian Ma, Guangdeng Chen, Tao Liu, Yaxi Liu, Yaxi Liu   +11 more
doaj   +1 more source

Simple and flexible detection of contiguous repeats using a suffix tree

, 2002
Stoye J, Gusfield D. Simple and flexible detection of contiguous repeats using a suffix tree. Theoretical Computer Science. 2002;270(1-2):843-856.We study the problem of detecting all occurrences of (primitive) tandem repeats and tandem arrays in a ...
Jens Stoye, Stoye, Jens, Stoye, Jens ; https://orcid.org/, Gusfield, Dan, Dan Gusfield   +4 more
core   +1 more source

ProRepeat: an integrated repository for studying amino acid tandem repeats in proteins

, 2011
ProRepeat (http://prorepeat.bioinformatics.nl/) is an integrated curated repository and analysis platform for in-depth research on the biological characteristics of amino acid tandem repeats.
Harm Nijveen, Lin, K., Jack A. M. Leunissen, K. Lin, Audrey David, Luo, H., Ke Lin, A. David, David, A., H. Nijveen, H. Luo, Leunissen, J.A.M., Nijveen, H., Hong Luo, J. A. M. Leunissen   +14 more
core   +1 more source

Simple repeated sequences in human satellite DNA

Nucleic Acids Research, 1982
In an extensive analysis, using a range of restriction endonucleases, HinfI and TaqI were found to differentiate satellites I, II and III & IV. Satellite I is resistant to digestion by TaqI, but is cleaved by HinfI to yield three major fragments of approximate size 770, 850 and 950bp, associated in a single length of DNA.
M, Frommer, J, Prosser, D, Tkachuk, A H, Reisner, P C, Vincent   +4 more
openaire   +3 more sources

POLYMORPHISM OF INTER-SIMPLE SEQUENCE REPEATS (ISSR) IN ALLIUM SPECIES

Овощи России, 2011
Some onion species such as A. altaicum, A. odorum, A. fistulosum, A. nutans, A. schoenoprasum, A. altissimum, A.proliferum, A. tuberosum, A. subhirsutum, A.roylei, A.auctum, A.rupestre, A.vavilovii were taken to compare each other applying ISSR markers ...
A.S. Domblides, E.A. Domblides, L.U. Kan, V.S. Romanov   +3 more
doaj   +1 more source