Inference of kinship coefficients from Korean SNP genotyping data [PDF]
BMB Reports, 2013 The determination of relatedness between individuals in afamily is crucial in analysis of common complex diseases. Wepresent a method to infer close inter-familial relationshipsbased on SNP genotyping data and provide the relationshipcoefficient of ...
Seong-Jin Park +5 more
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Toward genome-wide SNP genotyping [PDF]
Nature Genetics, 2005 Genome-wide association studies with SNP markers are expected to allow identification of genes that underlie complex disorders. Hundreds of thousands of SNP markers will be required for comprehensive genome-wide association studies. The development of microarray-based methods for SNP genotyping on this scale remains a demanding task, despite many ...
openaire +2 more sources
Sequence-based genotyping for marker discovery and co-dominant scoring in germplasm and populations.
PLoS ONE, 2012 Conventional marker-based genotyping platforms are widely available, but not without their limitations. In this context, we developed Sequence-Based Genotyping (SBG), a technology for simultaneous marker discovery and co-dominant scoring, using next ...
Hoa T Truong +10 more
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Genomic Analysis Using Bayesian Methods under Different Genotyping Platforms in Korean Duroc Pigs
Animals, 2020 Genomic evaluation has been widely applied to several species using commercial single nucleotide polymorphism (SNP) genotyping platforms. This study investigated the informative genomic regions and the efficiency of genomic prediction by using two ...
Jungjae Lee +9 more
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Using GWAS Data to Identify Copy Number Variants Contributing to Common Complex Diseases
, 2010 Copy number variants (CNVs) account for more polymorphic base pairs in the human genome than do single nucleotide polymorphisms (SNPs). CNVs encompass genes as well as noncoding DNA, making these polymorphisms good candidates for functional variation ...
Teslovich, Tanya M., Zöllner, Sebastian
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Low-density genotype panel for both parentage verification and discovery in a multi-breed sheep population [PDF]
, 2019 peer-reviewedThe generally low usage of artificial insemination and single-sire mating in sheep, compounded by mob lambing (and lambing outdoors), implies that parentage assignment in sheep is challenging.
Berry, Donagh +4 more
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An integrated molecular and conventional breeding scheme for enhancing genetic gain in maize in Africa [PDF]
, 2020 Open Access Journal; Published online: 06 Nov 2019Maize production in West and Central Africa (WCA) is constrained by a wide range of interacting stresses that keep productivity below potential yields.
Gedil, M., Menkir, A.
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Conflicting Results in SNP Genotype Assessment
BioTechniques, 2007 Single nucleotide polymorphisms (SNPs) are highly abundant in the genome and especially useful in the search for disease susceptibility genes via population-based association or linkage studies. Therefore, there is a strong need for high throughput and reliable methodologies to assess the SNP genotypes. Despite an unambiguous result of an SNP analysis,
Hansen, Lise Lotte +3 more
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Comparison of TaqMan, KASP and rhAmp SNP genotyping platforms in hexaploid wheat.
PLoS ONE, 2019 Advances in high-throughput genotyping enable the generation of genome-scale data much more easily and at lower cost than ever before. However, small-scale and cost-effective high-throughput single-nucleotide polymorphism (SNP) genotyping technologies ...
Habtamu Ayalew +6 more
doaj +1 more source
High-throughput genotyping of single nucleotide polymorphisms with rolling circle amplification
BMC Genomics, 2001 Background Single nucleotide polymorphisms (SNPs) are the foundation of powerful complex trait and pharmacogenomic analyses. The availability of large SNP databases, however, has emphasized a need for inexpensive SNP genotyping methods of commensurate ...
Sun Zhenyu +13 more
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