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Frontiers in Genetics, 2015 The marine environment accounts for an important part of the earth biodiversity, featuring several types of (even extreme) ecosystems, and is at the origin of life. Marine prokaryotic and eukaryotic organisms are very diverse, and are sometimes, in particular for the latter, the result of intricate evolutionary history. This biodiversity, encounters in
Thierry eTonon, Damien eEveillard
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Frontiers in Plant Science, 2014 The understanding of biological complexity has been greatly facilitated by cross-disciplinary, holistic approaches that allow insights into the function and regulation of biological processes that cannot be captured by dissecting them into their individual components. In addition, the development of novel tools has dramatically increased our ability to
Wolfgang eSchmidt
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Computational Systems Biology [PDF]
The Scientific World Journal, 2013 The complex biological systems consist of distinct molecules that exert their functions by interacting with each other, which makes it a big challenge to understand how the cellular machinery works. Recently, the accumulation of a large amount of multiscale omics data, such as next-generation sequencing data and protein interaction data, provides ...
Xing-Ming Zhao +3 more
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AutoAnalyze in Systems Biology [PDF]
Bioinformatics and Biology Insights, 2019 AutoAnalyze is a highly customizable framework for the visualization and analysis of large-scale model graphs. Originally developed for use in the automotive domain, it also supports efficient computation within molecular networks represented by reaction
Christian Saad +3 more
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Systems engineering to systems biology
Molecular Systems Biology, 2008 Mol Syst Biol. 4: 185 The ‘bottom‐up’ approach to systems biology entails quantitatively studying complex biological processes by analyzing their molecular components. A converse system biology approach is to infer properties of biological systems in a ‘top‐down’ fashion, using a variety of network reverse engineering methods, data‐driven modeling and
Muhammed A Yıldırım, Marc Vidal
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What is systems biology? [PDF]
Frontiers in Physiology, 2010 Systems biology is increasingly popular, but to many biologists it remains unclear what this new discipline actually encompasses. This brief personal perspective starts by outlining the aesthetic qualities that motivate systems biologists, discusses ...
Rainer Breitling, Rainer Breitling
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Journal of The Royal Society Interface, 2017 Complex systems theory is concerned with identifying and characterizing common design elements that are observed across diverse natural, technological and social complex systems.
Avi Ma’ayan
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Systems biology for crop improvement
The Plant Genome, 2021 In recent years, generation of large‐scale data from genome, transcriptome, proteome, metabolome, epigenome, and others, has become routine in several plant species.
Lekha T Pazhamala +4 more
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