Results 31 to 40 of about 3,348,134 (351)

A network approach reveals driver genes associated with survival of patients with triple-negative breast cancer

open access: yesiScience, 2021
Summary: We aimed to identify triple-negative breast cancer (TNBC) drivers that regulate survival time as predictive signatures that improve TNBC prognostication.
Courtney D. Dill   +4 more
doaj  

An Optimal Likelihood Free Method for Biological Model Selection [PDF]

open access: yesarXiv, 2022
Systems biology seeks to create math models of biological systems to reduce inherent biological complexity and provide predictions for applications such as therapeutic development. However, it remains a challenge to determine which math model is correct and how to arrive optimally at the answer.
arxiv  

Engineering simulations for cancer systems biology [PDF]

open access: yes, 2012
Computer simulation can be used to inform in vivo and in vitro experimentation, enabling rapid, low-cost hypothesis generation and directing experimental design in order to test those hypotheses.
Andrews, Paul S.   +8 more
core   +3 more sources

Developing an NLP-based Recommender System for the Ethical, Legal, and Social Implications of Synthetic Biology [PDF]

open access: yesarXiv, 2022
Synthetic biology is an emerging field that involves the engineering and re-design of organisms for purposes such as food security, health, and environmental protection. As such, it poses numerous ethical, legal, and social implications (ELSI) for researchers and policy makers.
arxiv  

Stochastic Physics, Complex Systems and Biology [PDF]

open access: yes, 2012
In complex systems, the interplay between nonlinear and stochastic dynamics, e.g., J. Monod's necessity and chance, gives rise to an evolutionary process in Darwinian sense, in terms of discrete jumps among attractors, with punctuated equilibrium ...
A Lasota   +45 more
core   +2 more sources

SYSTEMS BIOLOGY. Systems biology (un)certainties.

open access: yesScience (New York, N.Y.), 2015
How can modelers restore confidence in systems and computational biology?
Kirk, PDW, Babtie, AC, Stumpf, MPH
openaire   +2 more sources

Systems biology of SNPs [PDF]

open access: yesMolecular Systems Biology, 2006
Genome-scale networks can now be reconstructed based on high-throughput data sets. Mathematical analyses of these networks are used to compute their candidate functional or phenotypic states. Analysis of functional states of networks shows that the activity of biochemical reactions can be highly correlated in physiological states, forming so-called co ...
Jamshidi, Neema, Palsson, Bernhard Ø
openaire   +4 more sources

Approximation of Intractable Likelihood Functions in Systems Biology via Normalizing Flows [PDF]

open access: yesarXiv, 2023
Systems biology relies on mathematical models that often involve complex and intractable likelihood functions, posing challenges for efficient inference and model selection. Generative models, such as normalizing flows, have shown remarkable ability in approximating complex distributions in various domains. However, their application in systems biology
arxiv  

Imaging in Systems Biology [PDF]

open access: yesCell, 2007
Most systems biology approaches involve determining the structure of biological circuits using genomewide "-omic" analyses. Yet imaging offers the unique advantage of watching biological circuits function over time at single-cell resolution in the intact animal.
Megason, Sean G., Fraser, Scott E.
openaire   +4 more sources

Genetic association and single-cell transcriptome analyses reveal distinct features connecting autoimmunity with cancers

open access: yesiScience, 2022
Summary: Autoimmune diseases (ADs) are at a significantly higher risk of cancers with unclear mechanism. By searching GWAS catalog database and Medline, susceptible genes for five common ADs, including systemic lupus erythematosus (SLE), rheumatoid ...
Shasha Li   +10 more
doaj  

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