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Visualization and analysis of medically relevant tandem repeats in nanopore sequencing of control cohorts with pathSTR. [PDF]
Genome ResDe Coster W +6 more
europepmc +1 more source
GWAS on short tandem repeats identifies novel genetic mechanisms in Alzheimer’s disease
Gmelin D +9 more
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2013
Tandem repeats constitute a consistent fraction of eukaryotic genomes and are given by monomers or gene clusters repeated in a head-to-tail direction. Main examples are represented by microsatellites, minisatellites, satellites, rDNA genes, and protein-coding genes.
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Tandem repeats constitute a consistent fraction of eukaryotic genomes and are given by monomers or gene clusters repeated in a head-to-tail direction. Main examples are represented by microsatellites, minisatellites, satellites, rDNA genes, and protein-coding genes.
openaire +2 more sources
Approximate Tandem Repeats Computation
Proceedings of the 2017 International Conference on Information Technology, 2017In this paper, we present a linear-time algorithm to compute approximate tandem repeat in genomic sequences with the Longest Previous non-overlapping Factor (LPnF) table. The LPnF table is related to a certain type of Ziv-Lempel factorization in text compression that is an essential element for the design of efficient algorithms on strings.
Tida Butrak, Supaporn Chairungsee
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Short Tandem Repeats and Genetic Variation
2010Single nucleotide polymorphisms (SNPs) are widely distributed in the human genome and although most SNPs are the result of independent point-mutations, there are exceptions. When studying distances between SNPs, a periodic pattern in the distance between pairs of identical SNPs has been found to be heavily correlated with periodicity in short tandem ...
Madsen, Bo Eskerod +2 more
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2012
Hirabayashi and Kasai (1993) proposed designating galectin subfamilies as proto-, tandem-repeat, and chimera- types based on their domain organization. The prototype galectins (galectin-1, -2, -5, -7, -10, -11, -13, -14, and -15) consist of a single CRD with a short N-terminal sequence and have been discussed in Chap.
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Hirabayashi and Kasai (1993) proposed designating galectin subfamilies as proto-, tandem-repeat, and chimera- types based on their domain organization. The prototype galectins (galectin-1, -2, -5, -7, -10, -11, -13, -14, and -15) consist of a single CRD with a short N-terminal sequence and have been discussed in Chap.
openaire +1 more source
2007
Tandemly repeated sequences are ubiquitous components of both prokaryotic and eukaryotic genomes. Renowned examples of tandem repeats (TR) include micro-satellites, mini-satellites, or satellite DNA, as well as tandemly repeated genes. The evolutionary event that giveq rise to tandem repeats, tandem duplication, is major force that drives the formation
openaire +1 more source
Tandemly repeated sequences are ubiquitous components of both prokaryotic and eukaryotic genomes. Renowned examples of tandem repeats (TR) include micro-satellites, mini-satellites, or satellite DNA, as well as tandemly repeated genes. The evolutionary event that giveq rise to tandem repeats, tandem duplication, is major force that drives the formation
openaire +1 more source
Short tandem repeats bind transcription factors to tune eukaryotic gene expression
Science, 2023Connor A Horton +2 more
exaly
Tandem repeat polymorphisms shape local adaptation
Trends in Ecology & EvolutionWithin widespread populations, efficient adaptation to local environmental conditions can be facilitated by abundant quantitative variation supplied by short tandem DNA repeats. The peculiar site-specific mutability of such repeats can provide populations with the functional equivalent of tuning knobs for adaptively adjusting quantitative trait values.
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