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Evolution: The Plastic Transcriptome [PDF]
Current Biology, 2006 Studies across a wide range of species point to a surprising degree of plasticity in the transcriptional states that organisms can adopt, suggesting that organisms often respond to environmental challenges through wholesale reprogramming of their gene expression.
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Genomes and Transcriptomes of Duckweeds [PDF]
Frontiers in Chemistry, 2018 Duckweeds (Lemnaceae family) are the smallest flowering plants that adapt to the aquatic environment. They are regarded as the promising sustainable feedstock with the characteristics of high starch storage, fast propagation, and global distribution.
Wenqin Wang +4 more
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Dr.seq2: A quality control and analysis pipeline for parallel single cell transcriptome and epigenome data. [PDF]
PLoS ONE, 2017 An increasing number of single cell transcriptome and epigenome technologies, including single cell ATAC-seq (scATAC-seq), have been recently developed as powerful tools to analyze the features of many individual cells simultaneously.
Chengchen Zhao +3 more
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Sequencing and analysis of the gastrula transcriptome of the brittle star Ophiocoma wendtii [PDF]
, 2012 Background The gastrula stage represents the point in development at which the three primary germ layers diverge. At this point the gene regulatory networks that specify the germ layers are established and the genes that define the differentiated states ...
Garey, James R. +4 more
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High-throughput sequencing of the transcriptome and chromatin accessibility in the same cell
Nature Biotechnology, 2019 Single-cell RNA sequencing can reveal the transcriptional state of cells, yet provides little insight into the upstream regulatory landscape associated with open or accessible chromatin regions.
S. Chen, B. Lake, Kun Zhang
semanticscholar +1 more source
The human olfactory transcriptome [PDF]
BMC Genomics, 2016 Olfaction is a versatile sensory mechanism for detecting thousands of volatile odorants. Although molecular basis of odorant signaling is relatively well understood considerable gaps remain in the complete charting of all relevant gene products. To address this challenge, we applied RNAseq to four well-characterized human olfactory epithelial samples ...
Jayant M. Pinto +10 more
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High-Frequency Promoter Firing Links THO Complex Function to Heavy Chromatin Formation
Cell Reports, 2013 The THO complex is involved in transcription, genome stability, and messenger ribonucleoprotein (mRNP) formation, but its precise molecular function remains enigmatic.
John Mouaikel +8 more
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Comparative Analysis of Muscle Transcriptome between Pig Genotypes Identifies Genes and Regulatory Mechanisms Associated to Growth, Fatness and Metabolism. [PDF]
, 2015 Iberian ham production includes both purebred (IB) and Duroc-crossbred (IBxDU) Iberian pigs, which show important differences in meat quality and production traits, such as muscle growth and fatness.
Ayuso, Miriam +12 more
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Proceedings of the National Academy of Sciences of the United States of America, 2019 Significance The spatial organization of RNAs within cells and spatial patterning of cells within tissues play crucial roles in many biological processes.
C. Xia +4 more
semanticscholar +1 more source
Neoplasia: An International Journal for Oncology Research, 2006 In this study, we investigated the time course gene expression profile of preneoplastic nodules and hepatocellular carcinomas (HCC) to define the genes implicated in cancer progression in a resistant hepatocyte model. Tissues that included early nodules (
Julio Isael Pérez-Carréon +9 more
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