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The Evolution of Gene Expression and the Transcriptome–Phenotype Relationship [PDF]
Seminars in Cell and Developmental Biology, 2012 Changes in gene expression underlie the adaptive evolution in many complex phenotypes, and the recent increase in the availability of multi-species comparative transcriptome data has made it possible to scan whole transcriptomes for loci that have experienced adaptive changes in expression.
Judith E. Mank +2 more
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RNA-Seq as an Effective Tool for Modern Transcriptomics, A Review-based Study
Journal of Applied Research in Plant Sciences, 2022 Transcriptome analysis is a useful method for identification and understanding genes. Finding genes that are differentially expressed between conditions is a crucial aspect of transcriptomics.
Mekibib Million, Tileye Feyissa
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Detecting Rhythmic Gene Expression in Single-cell Transcriptomics
Journal of Biological Rhythms, 2023 An autonomous, environmentally synchronizable circadian rhythm is a ubiquitous feature of life on Earth. In multicellular organisms, this rhythm is generated by a transcription-translation feedback loop present in nearly every cell that drives daily expression of thousands of genes in a tissue-dependent manner.
Bingxian Xu +3 more
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Scientific Reports, 2021 The role of DNA methylation and its interaction with gene expression and transcriptome plasticity is poorly understood, and current insight comes mainly from studies in very few model plant species. Here, we study gene body DNA methylation (gbM) and gene
Laura Entrambasaguas +4 more
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Characterization of Pythium Transcriptome and Gene Expression Analysis at Different Stages of Fermentation. [PDF]
PLoS ONE, 2013 The Pythium splendens is a potentially useful organism for the synthesis of large amounts of eicosapentaenoic acid. Peak biomass and lipid accumulation do not occur at the same time and growth temperature has an effect on the fatty acid composition ...
Yuanmin Zhu +8 more
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BMC Bioinformatics, 2021 Background Lately, high-throughput RNA sequencing has been extensively used to elucidate the transcriptome landscape and dynamics of cell types of different species. In particular, for most non-model organisms lacking complete reference genomes with high-
Sung-Gwon Lee, Dokyun Na, Chungoo Park
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Cancer Medicine, 2022 The objective of this study was to elucidate the molecular background of sessile serrated adenoma/polyp (SSA/P) endoscopically resected with comprehensive gene expression analysis.
Daisuke Ohki +12 more
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A comparison of next generation sequencing technologies for transcriptome assembly and utility for RNA-Seq in a non-model bird. [PDF]
PLoS ONE, 2014 De novo assembled transcriptomes, in combination with RNA-Seq, are powerful tools to explore gene sequence and expression level in organisms without reference genomes.
Findley R Finseth, Richard G Harrison
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Gene Expression Transcriptomics Primer 2017
, 2021 This is to give anyone a high-level rough guide to Gene Expression. It was originally written in 2017 and therefore is out of date, but the high-level ideas are hopefully still valid.
Mosbergen, Rowland +3 more
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Reference quantitative transcriptome dataset for adult Caenorhabditis elegans
Data in Brief, 2019 Caenorhabditis elegans is a nematode widely used in biology and genomics as a model organism. We provide an integrated, quantitative reference map for the transcriptome of whole, wild type Bristol N2 strain C. elegans worms.
Allison Piovesan +5 more
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