Structure and sequence evolution in the pennycress (Thlaspi arvense) pangenome
Summary Eukaryotic genomes harbor many forms of variation, including nucleotide diversity and structural polymorphisms, which experience natural selection and contribute to genome evolution and biodiversity. Harnessing this variation for agriculture hinges on our ability to detect, quantify, catalog, and deploy genetic diversity. Here, we explore seven
Kevin A. Bird +25 more
wiley +1 more source
Characterization of genetic context of <i>bla</i> <sub>KPC</sub> in <i>Pseudomonas aeruginosa</i>. [PDF]
Chen M +11 more
europepmc +1 more source
ABSTRACT Chromatin interactions establish spatial proximity between distant regulatory elements and their target genes, significantly influencing gene expression, and phenotypic traits. In this study, we present a plant chromatin interaction prediction model called PlantCTCIP based on Convolutional Neural Networks and Transformer.
Zhenye Wang +14 more
wiley +1 more source
The repeatome landscape in the "<i>Saccharum</i> complex". [PDF]
Soares NR +4 more
europepmc +1 more source
Characterization of the transposable element landscape shaping the Ectocarpus genome. [PDF]
Dinatale E +4 more
europepmc +1 more source
Chromosome-scale Genome Assembly of the Most Abundant Ectomycorrhizal Fungus Cenococcum Geophilum Reveals Massive TE Expansion and RIP Defense Mechanism. [PDF]
Dauphin B +10 more
europepmc +1 more source
Comparative genomics reveals avian Acinetobacter baumannii as antimicrobial resistance reservoirs and bovine strains with elevated pathogenicity. [PDF]
Bhargavi D +8 more
europepmc +1 more source
Cross-sectoral sharing of CTX-M-producing <i>Escherichia coli</i>: a One Health analysis to understand dissemination modes. [PDF]
Jiang S +5 more
europepmc +1 more source
Genomic profiling of <i>Morganella morganii</i>: insights into antibiotic resistance genes, pathogenicity islands, and toxin-antitoxin systems. [PDF]
Senbadejo TY, Bourne CR, Isawumi A.
europepmc +1 more source

