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The Transposon Registry [PDF]

open access: yesMobile DNA, 2019
Transposable elements in prokaryotes are found in many forms and therefore a robust nomenclature system is needed in order to allow researchers to describe and search for them in publications and databases.
Supathep Tansirichaiya   +2 more
doaj   +6 more sources

The widespread IS200/IS605 transposon family encodes diverse programmable RNA-guided endonucleases

open access: yesScience, 2021
Description Tracing the origin of CRISPR-Cas CRISPR-Cas systems have transformed genome editing and other biotechnologies; however, the broader origins and diversity of RNA-guided nucleases have largely remained unexplored. Altae-Tran et al.
Han Altae-Tran   +2 more
exaly   +2 more sources

A decade of advances in transposon-insertion sequencing

open access: yesNature Reviews Genetics, 2020
It has been 10 years since the introduction of modern transposon-insertion sequencing (TIS) methods, which combine genome-wide transposon mutagenesis with high-throughput sequencing to estimate the fitness contribution or essentiality of each genetic ...
Amy K Cain   +2 more
exaly   +2 more sources

Mouse B2 SINE elements function as IFN-inducible enhancers

open access: yeseLife, 2023
Regulatory networks underlying innate immunity continually face selective pressures to adapt to new and evolving pathogens. Transposable elements (TEs) can affect immune gene expression as a source of inducible regulatory elements, but the significance ...
Isabella Horton   +4 more
doaj   +1 more source

Spread of the mcr-1 colistin-resistance gene in Escherichia coli through plasmid transmission and chromosomal transposition in French goats

open access: yesFrontiers in Microbiology, 2023
IntroductionColistin-resistance widely disseminated in food-producing animals due to decades of colistin use to treat diarrhea. The plasmid-borne mcr-1 gene has been extensively reported from bovine, swine and chicken worldwide, but smaller productions ...
Michaël Treilles   +5 more
doaj   +1 more source

Transposon-associated TnpB is a programmable RNA-guided DNA endonuclease

open access: yesNature, 2021
Transposition has a key role in reshaping genomes of all living organisms1. Insertion sequences of IS200/IS605 and IS607 families2 are among the simplest mobile genetic elements and contain only the genes that are required for their transposition and its
Tautvydas Karvelis   +8 more
semanticscholar   +1 more source

Optimization of Transposon Mutagenesis Methods in Pseudomonas antarctica

open access: yesMicroorganisms, 2023
Pseudomonas is a widespread genus in various host and environmental niches. Pseudomonas exists even in extremely cold environments such as Antarctica. Pseudomonas antarctica is a psychrophilic bacterium isolated from Antarctica. P.
Sangha Kim, Changhan Lee
doaj   +1 more source

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