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Jurnal Ilmiah SINERGI, 2023 Dipterocarpaceae is one of the most prominent plant families, with more than 500 members of species. This family mostly used timber plants for housing, making ships, decking, and primary materials for making furniture. In Indonesia, many Dipterocarpaceae
Mirna Yunita +2 more
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Phylogenetic information complexity: Is testing a tree easier than finding it? [PDF]
, 2008 Phylogenetic trees describe the evolutionary history of a group of present-day species from a common ancestor. These trees are typically reconstructed from aligned DNA sequence data.
Mossel, Elchanan +2 more
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Taxonomic colouring of phylogenetic trees of protein sequences
BMC Bioinformatics, 2006 Background Phylogenetic analyses of protein families are used to define the evolutionary relationships between homologous proteins. The interpretation of protein-sequence phylogenetic trees requires the examination of the taxonomic properties of the ...
Andrade-Navarro Miguel A +2 more
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EvolveAGene 3: A DNA coding sequence evolution simulation program [PDF]
, 2007 EvolveAGene 3 is a realistic coding sequence simulation program that separates mutation from selection and allows the user to set selection conditions, including variable regions of selection intensity within the sequence and variation in intensity of ...
Barry G. Hall
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Combinatorial families of multilabelled increasing trees and hook-length formulas [PDF]
, 2014 In this work we introduce and study various generalizations of the notion of increasingly labelled trees, where the label of a child node is always larger than the label of its parent node, to multilabelled tree families, where the nodes in the tree can ...
Kuba, Markus, Panholzer, Alois
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A Mutual Information Based Sequence Distance For Vertebrate Phylogeny Using Complete Mitochondrial Genomes [PDF]
, 2007 Traditional sequence distances require alignment. A new mutual information based sequence distance without alignment is defined in this paper. This distance is based on compositional vectors of DNA sequences or protein sequences from complete genomes ...
Anh, Vo +3 more
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Frontiers in Microbiology, 2022 Temple tree (Plumeria rubra f. acutifolia), an important fragrant-flower tree extensively used in the urban landscaping is known to be infected with a tobamovirus, frangipani mosaic virus (FrMV).
Alok Kumar +4 more
doaj +1 more source
Constituent Parsing as Sequence Labeling [PDF]
, 2018 We introduce a method to reduce constituent parsing to sequence labeling. For each word w_t, it generates a label that encodes: (1) the number of ancestors in the tree that the words w_t and w_{t+1} have in common, and (2) the nonterminal symbol at the ...
Gómez-Rodríguez, Carlos +1 more
core +2 more sources
mbonsai: Application Package for Sequence Classification by Tree Methodology
Journal of Statistical Software, 2018 In many applications such as transaction data analysis, the classification of long chains of sequences is required. For example, brand purchase history in customer transaction data is in a form like AABCABAA, where A, B, and C are brands of a consumer ...
Yukinobu Hamuro +3 more
doaj +1 more source
Schreier graphs of the Basilica group [PDF]
, 2010 With any self-similar action of a finitely generated group $G$ of automorphisms of a regular rooted tree $T$ can be naturally associated an infinite sequence of finite graphs $\{\Gamma_n\}_{n\geq 1}$, where $\Gamma_n$ is the Schreier graph of the action ...
D'Angeli, Daniele +3 more
core +5 more sources