BOOL-AN: A method for comparative sequence analysis and phylogenetic reconstruction [PDF]
, 2009 A novel discrete mathematical approach is proposed as an additional tool for molecular systematics which does not require prior statistical assumptions concerning the evolutionary process.
Ittzés, Péter +4 more
core +1 more source
Sequence Comparison Alignment-Free Approach Based on Suffix Tree and L-Words Frequency
The Scientific World Journal, 2012 The vast majority of methods available for sequence comparison rely on a first sequence alignment step, which requires a number of assumptions on evolutionary history and is sometimes very difficult or impossible to perform due to the abundance of gaps ...
Inês Soares, Ana Goios, António Amorim
doaj +1 more source
mbonsai: Application Package for Sequence Classification by Tree Methodology
Journal of Statistical Software, 2018 In many applications such as transaction data analysis, the classification of long chains of sequences is required. For example, brand purchase history in customer transaction data is in a form like AABCABAA, where A, B, and C are brands of a consumer ...
Yukinobu Hamuro +3 more
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Estimating dispersal rates and locating genetic ancestors with genome-wide genealogies
eLifeSpatial patterns in genetic diversity are shaped by individuals dispersing from their parents and larger-scale population movements. It has long been appreciated that these patterns of movement shape the underlying genealogies along the genome leading to
Matthew Osmond, Graham Coop
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Draft genome sequence of the rubber tree
BMC Genomics, 2013 Background Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high elasticity, flexibility, and resilience that has played a critical role in the world economy since
Rahman Ahmad Yamin Abdul +28 more
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AKR sequence alignment homologous tree.
, 2021 AKR sequence alignment homologous tree.
Xiaoli Fu (316464) +2 more
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SNP identification from RNA sequencing and linkage map construction of rubber tree for anchoring the draft genome. [PDF]
PLoS ONE, 2015 Hevea brasiliensis, or rubber tree, is an important crop species that accounts for the majority of natural latex production. The rubber tree nuclear genome consists of 18 chromosomes and is roughly 2.15 Gb.
Jeremy R Shearman +8 more
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The genome sequence of the tree of heaven, Ailanthus altissima (Mill.) Swingle, 1916.
, 2023 We present a genome assembly from an individual (tree of heaven; Streptophyta; Magnoliopsida; Sapindales; Simaroubaceae). The genome sequence is 939 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules.
Tree of Life Core Informatics collective +9 more
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Natural Language Generation Using Dependency Tree Decoding for Spoken Dialog Systems
IEEE Access, 2019 In this paper, we propose a new natural language generation (NLG) method for spoken dialog systems and demonstrate its capacity. Studies on NLG often employ sequence decoding, which generates the words comprising a sentence in sequential order and uses ...
Youngmin Park, Sangwoo Kang
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Tree of life based on genome context networks. [PDF]
PLoS ONE, 2008 Efforts in phylogenomics have greatly improved our understanding of the backbone tree of life. However, due to the systematic error in sequence data, a sequence-based phylogenomic approach leads to well-resolved but statistically significant incongruence.
Guohui Ding +8 more
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