Results 121 to 130 of about 928,374 (298)

WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads

, 2009
Gerlach W, Jünemann S, Tille F, Goesmann A, Stoye J. WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics.
Jünemann, Sebastian, Stoye Jens, Sebastian Jünemann, Goesmann, Alexander ; https://orcid.org/, Goesmann Alexander, Tille Felix, Gerlach Wolfgang, Jens Stoye, Wolfgang Gerlach, Gerlach, Wolfgang, Stoye, Jens ; https://orcid.org/, Jünemann Sebastian, Tille, Felix, Felix Tille, Alexander Goesmann   +14 more
core   +1 more source

Multi‐omics biomarkers for intestinal infection and inflammation in inflammatory bowel disease: Current evidence, translational challenges, and diagnostic opportunities

Interdisciplinary Medicine, EarlyView.
Prospective multi‐site cohorts, multi‐omics profiling, and computational analysis may help identify biomarker patterns across clinical settings in IBD and superimposed infections. With further mechanistic and clinical validation, these signals could support the development of practical multi‐analyte tools for more precise diagnosis and management ...
Ziyu Yang, Jiayi Yao, Xinxian Zhao, Yan Xu, Yifan Chen, Tianchi Chen, Ying Jian, Min Li   +7 more
wiley   +1 more source

MGtree: A Fast and Flexible Alignment-Based Metagenomics Pipeline

Viruses
Metagenomics analysis is a critical tool in identifying and typing viral samples to aid surveillance, clinical, epidemiological, and other workflows. Despite advances in sequencing technology and analysis pipelines, there are still limitations that lead ...
Samantha L. Sholes, Scott Norton, Alfredo Gonzalez, John M. Gaspar   +3 more
doaj   +1 more source

Viral metagenomics in host-associated systems [PDF]

, 2010
Title from first page of PDF file (viewed July 30, 2010)Available free in the San Diego State University Digital Research Collection.Includes bibliographical references (leaves 150-151)Viruses are the most abundant and diverse entities on earth ...
Willner, Dana Leigh
core  

Microbial communities and functional diversity in seafood

JSFA reports, EarlyView.
Abstract Functional diversity encompasses ecosystem processes that enhance adaptability to environmental change. This study explores the diversity of microorganisms associated with seafood. In this paper, we present our knowledge of microbial diversity in relation to seafood.
Christian Larbi Ayisi, Samuel Ayeh Osei, Grace Afumwaa Boamah, Gertrude Dzifa Mensah   +3 more
wiley   +1 more source

Metagenomic Analysis of the Ferret Fecal Viral Flora

PLoS ONE, 2013
Ferrets are widely used as a small animal model for a number of viral infections, including influenza A virus and SARS coronavirus. To further analyze the microbiological status of ferrets, their fecal viral flora was studied using a metagenomics approach.
Smits, Saskia L, Raj, V Stalin, Oduber, Minoushka D, Schapendonk, Claudia M E, Bodewes, Rogier, Provacia, Lisette, Stittelaar, Koert J, Osterhaus, Albert D M E, Haagmans, Bart L   +8 more
openaire   +5 more sources

Metagenomics

, 2022
Bacterial and viral metagenomic ...
USDA ARS (17854841)
core  

Microbially driven organic carbon cycling at the land−sea interface: Advances and an integrated study framework

mLife, EarlyView.
Abstract The land−sea interface is a vital component of global biogeochemical cycles, where microorganisms drive the cycling of carbon, nitrogen, and sulfur. This review synthesizes the research progress from representative land−sea interfaces to elucidate how the microbial community structure and metabolic function influence the mobilization ...
Quanrui Chen, Kai Tang, Zhili He, Meng Li, Jun Yang, Weidong Zhai, Qiang Zheng, Nianzhi Jiao   +7 more
wiley   +1 more source

Beyond cells – The virome in the human holobiont

Microbial Cell, 2019
Viromics, or viral metagenomics, is a relatively new and burgeoning field of research that studies the complete collection of viruses forming part of the microbiota in any given niche.
Rodrigo García-López, Vicente Pérez-Brocal, Andrés Moya   +2 more
doaj   +1 more source

Single amino acid change in tomato brown rugose fruit virus breaks virus-specific resistance in new resistant tomato cultivar

Frontiers in Plant Science
IntroductionTomato cultivation across the world is severely affected by emerging plant viruses. An effective method for protection of commercial crops against viral threats is the use of cultivars harboring resistance genes.
Zafeiro Zisi, Zafeiro Zisi, Lucas Ghijselings, Elise Vogel, Elise Vogel, Christine Vos, Jelle Matthijnssens   +6 more
doaj   +1 more source