Results 31 to 40 of about 30,844 (295)
Emerging Microbes and Infections, 2017 Sapoviruses (SaVs) belong to the Sapovirus genus, in the family Caliciviridae. They have been associated with gastroenteritis in humans and in pigs but not in other animals. In addition, some strains from pigs, chimpanzees and rodents show close sequence
Claude Kwe Yinda +7 more
doaj +1 more source
iMeta, 2022 Traditional or “bulk” viral enrichment and amplification methods used in viral metagenomics introduce unavoidable bias in viral diversity. This bias is due to shortcomings in existing viral enrichment methods and overshadowing by the more abundant viral ...
Xiaoqiong Gu +10 more
doaj +1 more source
Impact of HIV infection and integrase strand transfer inhibitors-based treatment on the gut virome
Scientific Reports, 2022 Viruses are the most abundant components of the human gut microbiome with a significant impact on health and disease. The effects of human immunodeficiency virus (HIV) infection on gut virome has been scarcely analysed.
Pablo Villoslada-Blanco +12 more
doaj +1 more source
Complete genome sequence of bovine polyomavirus type 1 from aborted cattle, isolated in Belgium in 2014 [PDF]
, 2016 <p>The complete and fully annotated genome sequence of a bovine polyomavirus type 1 (BPyV/BEL/1/2014) from aborted cattle was assembled from a metagenomics data set. The 4,697-bp circular dsDNA genome contains 6 protein-coding genes.
Behaeghel, Isabelle +7 more
core +2 more sources
Novel hemotropic mycoplasmas are widespread and genetically diverse in vampire bats [PDF]
, 2017 Bats (Order: Chiroptera) have been widely studied as reservoir hosts for viruses of concern for human and animal health. However, whether bats are equally competent hosts of non-viral pathogens such as bacteria remains an important open question. Here,
Altizer, S.M. +7 more
core +1 more source
Mining for viral fragments in methylation enriched sequencing data [PDF]
, 2015 Most next generation sequencing experiments generate more data than is required for the experimental set up. For example, methyl-CpG binding domain (MBD) affinity purification based sequencing is often used for DNA-methylation profiling, but up to 30% of
Ed eSchuuring +7 more
core +4 more sources
Integrating Viral Metagenomics into an Ecological Framework [PDF]
Annual Review of Virology, 2021 Viral metagenomics has expanded our knowledge of the ecology of uncultured viruses, within both environmental (e.g., terrestrial and aquatic) and host-associated (e.g., plants and animals, including humans) contexts. Here, we emphasize the implementation of an ecological framework in viral metagenomic studies to address questions in virology rarely ...
Pacifica, Sommers +3 more
openaire +2 more sources
Bioinformatics tools for analysing viral genomic data [PDF]
, 2016 The field of viral genomics and bioinformatics is experiencing a strong resurgence due to high-throughput sequencing (HTS) technology, which enables the rapid and cost-effective sequencing and subsequent assembly of large numbers of viral genomes.
Davison, A. +7 more
core +1 more source
MetLab: An In Silico Experimental Design, Simulation and Analysis Tool for Viral Metagenomics Studies. [PDF]
PLoS ONE, 2016 Metagenomics, the sequence characterization of all genomes within a sample, is widely used as a virus discovery tool as well as a tool to study viral diversity of animals.
Martin Norling +4 more
doaj +1 more source
Chapparvoviruses occur in at least three vertebrate classes and have a broad biogeographic distribution [PDF]
, 2017 Chapparvoviruses are a highly divergent group of parvoviruses (family Parvoviridae) that have recently been identified via metagenomic sampling of animal faeces.
Araujo, Jansen de +9 more
core +2 more sources