Results 121 to 130 of about 97,288 (294)

Extracting functional trends from whole genome duplication events using comparative genomics [PDF]

, 2016
Background: The number of species with completed genomes, including those with evidence for recent whole genome duplication events has exploded. The recently sequenced Atlantic salmon genome has been through two rounds of whole genome duplication since ...
Sandve, Simen Rød, Sandve, Simen Rod, Simen Rød Sandve, David A. Liberles, Hermansen, Russell A., Russell A. Hermansen, Torgeir R. Hvidsten, Hvidsten, Torgeir R., Hvidsten, Torgeir Rhoden, Liberles, David A., Hvidsten, Torgeir R.,   +10 more
core   +3 more sources

Predicting the virulence of MRSA from its genome sequence [PDF]

, 2014
This work is supported by the EC-FP7 program no. 245500 and the BBSRCMicrobial virulence is a complex and often multifactorial phenotype, intricately linked to a pathogen's evolutionary trajectory.
Josefsson, Elisabet,, Hawkins, E., Josefsson, Elisabet, Holden, M., Yajjala, Vijaya Kumar, Feil, E. J., Read, T. D., Recker, Mario, Rudkin, Justine K., P. D. Fey, Z. Gulay, Kumar Yajjala, Vijaya, Wilson, D., E. J. Feil, Williams, P., T. Widhelm, Sloan, Tim J, Fey, P. D., Gulay, Zeynep, Parfett, S., Gulay, Z., Endres, Jennifer L, M. Recker, Priest, Nicholas K, Hurst, Laurence D, E. Josefsson, Lewis, K., Fey, Paul D, Sloan, Tim J., van den Elsen, J., M. Laabei, Peacock, Sharon J., Priest, Nicholas K., Feil, Edward J., Read, Timothy D., Aldeljawi, Mona, Parfett, Sara, J. K. Rudkin, L. Scowen, Hurst, Laurence D., P. Williams, Widhelm, Todd, S. Parfett, J. L. Endres, N. K. Priest, S. J. Peacock, Massey, R. C., Holden, Matthew, Peacock, Sharon J, J. van den Elsen, Bayles, Kenneth W., M. Holden, Massey, Ruth C., Scowen, L., Feil, Edward J, Rudkin, J. K., Hurst, L. D., E. Hawkins, M. Aldeljawi, Rudkin, Justine K, Read, Timothy D, K. W. Bayles, V. K. Yajjala, Wilson, Daniel, T. J. Sloan, L. D. Hurst, Recker, M., Aldeljawi, M., D. Wilson, Bayles, K. W., Laabei, Maisem, K. Lewis, Bayles, Kenneth W, Scowen, Lucy, Endres, J. L., Laabei, M., Hawkins, Erica, Yajjala, V. K., Williams, Paul, Sloan, T. J., Massey, Ruth C, Lewis, Katie, Endres, Jennifer L., Fey, Paul D., Peacock, S. J., Priest, N. K., van den Elsen, Jean, R. C. Massey, T. D. Read, Widhelm, T.   +89 more
core   +1 more source

3D Chromatin Architecture Provides Insights Into Leaf Trait Variation Among Pear Species

Advanced Science, EarlyView.
ABSTRACT Three‐dimensional (3D) chromatin architecture plays a fundamental role in eukaryotic gene regulations, its functional significance in perennial fruit trees remains poorly characterized despite extensive applications in crop genomics. Here, we developed high‐resolution (∼5 kb) Hi‐C maps of Pyrus and compared 3D genomic architecture of three ...
Yueyuan Liu, Chenhui Han, Cheng Xue, Manyi Sun, Bobo Song, Yongsong Xue, Guangyan Yang, Shaozhuo Xu, Wei Wei, Jiaming Li, Runze Wang, Jun Wu   +11 more
wiley   +1 more source

Diversified regulation of circadian clock gene expression following whole genome duplication.

PLoS Genetics, 2020
Across taxa, circadian control of physiology and behavior arises from cell-autonomous oscillations in gene expression, governed by a networks of so-called 'clock genes', collectively forming transcription-translation feedback loops. In modern vertebrates,
Alexander C West, Marianne Iversen, Even H Jørgensen, Simen R Sandve, David G Hazlerigg, Shona H Wood   +5 more
doaj   +1 more source

Novel teleost whole-genome sequences for studying genome evolution after whole genome duplication

, 2019
Novel teleost whole-genome sequences for studying genome evolution after whole genome duplication.
Bobe, Julien
core  

Transcription Factor Promiscuity Drives Regulatory Rewiring and Evolvability in Gene Networks in Bacteria

Advanced Science, EarlyView.
When a master transcription factor (TF) is lost, bacteria can rapidly rewire gene regulatory networks by co‐opting related regulators. Using experimental evolution in Pseudomonas fluorescens, we show that TF promiscuity (low‐level, non‐cognate binding) provides the raw material for rewiring. Successful co‐option follows a predictable hierarchy governed
Tiffany B. Taylor, Alan M. Rice
wiley   +1 more source

Whole Genome Duplications and a ‘Function’ for Junk DNA? Facts and Hypotheses

PLoS ONE, 2009
The lack of correlation between genome size and organismal complexity is understood in terms of the massive presence of repetitive and non-coding DNA. This non-coding subgenome has long been called "junk" DNA. However, it might have important functions.
Veitia, Reiner A., Bottani, Samuel
openaire   +5 more sources

Duplicability of self-interacting human genes

BMC Evolutionary Biology, 2010
Background There is increasing interest in the evolution of protein-protein interactions because this should ultimately be informative of the patterns of evolution of new protein functions within the cell.
Makino Takashi, Pérez-Bercoff Åsa, McLysaght Aoife   +2 more
doaj   +1 more source

Novel teleost whole-genome sequences for studying genome evolution after whole genome duplication and sex determination

, 2019
Novel teleost whole-genome sequences for studying genome evolution after whole genome duplication and sex determination.
Guiguen, Yann
core  

AGAPE (Automated Genome Analysis PipelinE) for Pan-Genome Analysis of Saccharomyces cerevisiae

, 2015
The characterization and public release of genome sequences from thousands of organ- isms is expanding the scope for genetic variation studies. However, understanding the phenotypic consequences of genetic variation remains a challenge in eukaryotes due
Kisurb Choe, Benjamin J. A. Dickins (703565), Stacia Engel (703566), Barbara Dunn, Barbara Dunn (393141), Janos Demeter (5547), Song Giltae, Giltae Song, Dunn Barbara, Jennifer Gallagher, Cherry, JM, Choe, K, Dickins Benjamin J. A., J. Michael Cherry (5627), Demeter, J, Janos Demeter, Dickins, BJA, Snyder, M, Giltae Song (703564), Song, G, Dunn, B, Benjamin J A Dickins, J Michael Cherry, Gallagher, J, Stacia Engel, Engel, S, Demeter Janos, Michael Snyder, Engel Stacia, Cherry J. Michael   +29 more
core   +1 more source