Results 41 to 50 of about 157,765 (267)

Differential retention and divergent resolution of duplicate genes following whole-genome duplication [PDF]

Genome Research, 2014
TheParamecium aureliacomplex is a group of 15 species that share at least three past whole-genome duplications (WGDs). The macronuclear genome sequences ofP. biaureliaandP. sexaureliaare presented and compared to the published sequence ofP. tetraurelia.
McGrath, Casey L., Gout, Jean-Francois, Johri, Parul, Doak, Thomas G., Lynch, Michael   +4 more
openaire   +2 more sources

Diversification of Non-TIR Class NB-LRR Genes in Relation to Whole-Genome Duplication Events in Arabidopsis

Molecular Plant-Microbe Interactions, 2005
Arabidopsis thaliana is believed to have experienced at least two and possibly three whole-genome duplication events in its evolutionary history. In order to investigate the evolutionary relationships between these duplication events and diversification ...
Kan Nobuta, Tom Ashfield, Sun Kim, Roger W. Innes   +3 more
doaj   +1 more source

The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications [PDF]

, 2005
Background: Rice is an important staple food and, with the smallest cereal genome, serves as a reference species for studies on the evolution of cereals and other grasses. Therefore, decoding its entire genome will be a prerequisite for applied and basic
Batra, K., Bera, J., Bhargava, A., Bharti, A. K., Buell, C. R., Cattolico, L., Choisne, N., Collura, K., Couloux, A., Currie, J., D'Hont, A., Dalal, V., de Vazeille, A. R., Demange, N., Dike, S., Dixit, A., Dixit, R., Du, C., Fadrosh, D., Feldblyum, T., Fraser, C., Fuks, G., Gaikwad, K., Gaur, A., Ghaz, I. A., Gupta, V., Haas, B., Hamilton, J., Hsiao, J., Iobst, S., Jiang, J. M., Jin, W. W., Johri, S., Jones, K. M., Kapur, A., Khurana, J. P., Khurana, P., Kim, H. R., Kim, M., Kramer, M., Kudrna, D., Kumar, D., Lewis, M., Lin, H. N., Linton, E., Liu, J., Matsumoto, T., McCombie, W. R., Mendiratta, S. D., Messing, J., Mizuno, H., Mohanty, A., Mohapatra, T., Mueller, C., Namiki, N., Nascimento, L., O'Shaughnessy, A., Orjeda, G., Ouyang, S., Overton, L., Pal, A. K., Pal, S., Palmer, L., Pandit, A., Pelletier, E., Preston, R., Quetier, F., Raghuvanshi, S., Ragiba, M., Rambo, T., Reardon, M., Salanoubat, M., Salzberg, S. L., Samain, S., Sasaki, T., Scarpelli, C., Segurens, B., Sharma, S., Sharma, T. R., Singh, A., Singh, H., Singh, N. K., Singh, P. K., Singhal, V., Spiegel, L., Srivastava, S. K., Stum, D., Sureshbabu, K., Swain, S. C., Tallon, L., Tanyolac, B., Tsitrin, T., Tyagi, A. K., Utterback, T., Van Aken, S., Vij, S., Vuong, H., Vydianathan, R., Wang, A. H., Wang, W. M., Weaver, B., Weissenbach, J., White, O., Wincker, P., Wing, R. A., Wortman, J., Wu, J. Z., Yadav, M., Yu, Y., Yuan, Q. P., Zhu, W., Zismann, V., Zutavern, T.   +112 more
core   +1 more source

Studying Whole-Genome Duplication Using Experimental Evolution of Chlamydomonas

, 2023
In this chapter, we present the use of Chlamydomonas reinhardtii in experiments designed to study the evolutionary impacts of whole genome duplication. We shortly introduce the algal species and depict why it is an excellent model for experimental evolution.
Bafort, Quinten, Prost, Lucas, Aydogdu, Eylem, Van de Vloet, Antoine, Casteleyn, Griet, Van de Peer, Yves, De Clerck, Olivier   +6 more
openaire   +3 more sources

Extracting functional trends from whole genome duplication events using comparative genomics [PDF]

Biological Procedures Online, 2016
The number of species with completed genomes, including those with evidence for recent whole genome duplication events has exploded. The recently sequenced Atlantic salmon genome has been through two rounds of whole genome duplication since the divergence of teleost fish from the lineage that led to amniotes.
Hermansen, Russell A., Hvidsten, Torgeir R., Sandve, Simen Rod, Liberles, David A.   +3 more
openaire   +4 more sources

Nuclear–cytoplasmic balance: whole genome duplications induce elevated organellar genome copy number [PDF]

The Plant Journal, 2021
SUMMARY The plant genome is partitioned across three distinct subcellular compartments: the nucleus, mitochondria, and plastids. Successful coordination of gene expression among these organellar genomes and the nuclear genome is critical for plant function and fitness.
Matheus Fernandes Gyorfy, Emma R. Miller, Justin L. Conover, Corrinne E. Grover, Jonathan F. Wendel, Daniel B. Sloan, Joel Sharbrough   +6 more
openaire   +2 more sources

Whole genome duplication and transposable element proliferation drive genome expansion in Corydoradinae catfishes [PDF]

, 2018
Genome size varies significantly across eukaryotic taxa and the largest changes are typically driven by macro-mutations such as whole genome duplications (WGDs) and proliferation of repetitive elements.
Alexandrou, Markos, Carvalho, Gary, Creer, Simon, Marburger, Sarah, Oliveira, Claudio, Taggart, John B., Taylor, Martin I   +6 more
core   +3 more sources

Homozygous duplication identified by whole genome sequencing causes LRBA deficiency

npj Genomic Medicine, 2021
In more than one-third of primary immunodeficiency (PID) patients, extensive genetic analysis including whole-exome sequencing (WES) fails to identify the genetic defect.
Daniele Merico, Yehonatan Pasternak, Mehdi Zarrei, Edward J. Higginbotham, Bhooma Thiruvahindrapuram, Ori Scott, Jessica Willett-Pachul, Eyal Grunebaum, Julia Upton, Adelle Atkinson, Vy H. D. Kim, Elbay Aliyev, Khalid Fakhro, Stephen W. Scherer, Chaim M. Roifman   +14 more
doaj   +1 more source

Genome-Wide Analysis of MIKC^C-Type MADS-Box Genes Reveals Their Involvement in Flower Development in Malus Lineage

Horticulturae, 2023
MIKCC-type MADS-box genes are involved in floral organ identity determination but remain less studied in the Malus lineage. Based on the conserved domains of this gene family, we identified 341 genes among 13 species.
Kun Ning, Wangxiang Zhang, Donglin Zhang, Yousry A. El-Kassaby, Ting Zhou   +4 more
doaj   +1 more source

Two rounds of whole genome duplication in the ancestral vertebrate. [PDF]

PLoS Biology, 2005
The hypothesis that the relatively large and complex vertebrate genome was created by two ancient, whole genome duplications has been hotly debated, but remains unresolved.
Paramvir Dehal, Jeffrey L Boore
doaj   +1 more source