Microbiology Indonesia, 2010 Selected bacterial isolates from a Litopenaeus vannamei shrimp culture system and gut environment were assessed using 16S rRNA gene sequencing method to identify their identity and to construct their phylogenetic relationship.
TUBAGUS HAERU RAHAYU +4 more
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Measurement of the rates of synthesis of three components of ribosomes of Mycobacterium fortuitum: a theoretical approach to qRT-PCR experimentation. [PDF]
PLoS ONE, 2010 BACKGROUND: Except for the ribosomal protein L12 (rplL), ribosomal proteins are present as one copy per ribosome; L12 (rplL) is unusual because it is present as four copies per ribosome.
Maria Jesus Garcia +2 more
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Growth-laws and invariants from ribosome biogenesis in lower Eukarya [PDF]
Phys. Rev. Research 3, 013020 (2021), 2020 Eukarya and Bacteria are the most evolutionarily distant domains of life, which is reflected by differences in their cellular structure and physiology. For example, Eukarya feature membrane-bound organelles such as nuclei and mitochondria, whereas Bacteria have none.
arxiv +1 more source
Long non-coding RNAs as a source of new peptides [PDF]
, 2014 Deep transcriptome sequencing has revealed the existence of many transcripts that lack long or conserved open reading frames and which have been termed long non-coding RNAs (lncRNAs). Despite the existence of several well-characterized lncRNAs that play roles in the regulation of gene expression, the vast majority of them do not yet have a known ...
arxiv +1 more source
Improving RNA secondary structure prediction via state inference with deep recurrent neural networks [PDF]
Computational and Mathematical Biophysics, 8(1), 36-50, 2020, 2019 The problem of determining which nucleotides of an RNA sequence are paired or unpaired in the secondary structure of an RNA, which we call RNA state inference, can be studied by different machine learning techniques. Successful state inference of RNA sequences can be used to generate auxiliary information for data-directed RNA secondary structure ...
arxiv +1 more source
Molecular and Morphological identification of the genus Dineutus MacLeay, 1825 (Coleoptera, Gyrinidae) from Eastern Ghats, India [PDF]
Journal of Insect Biodiversity and Systematics, 2023 The present study is on the morphology and molecular data of the genus Dineutus MacLeay, were collected from the Eastern Ghats mountains in Odisha, Andhra Pradesh, Telangana, Tamil Nadu states located in the eastern Ghats of India.
Jaiswal Deepa +5 more
doaj
Diagnostic Techniques for Early Detection of Phytoplasma Diseases
Syrian Journal for Science and Innovation, 2023 Phytoplasmas are a type of bacteria, specifically belonging to the group of Mollicutes, characterized by their lack of cell walls and inability to be cultured in lab settings.
Naofel Aljafer, Hail Rihan
doaj +1 more source
Stochastic thermodynamics and modes of operation of a ribosome: a network theoretic perspective [PDF]
Phys. Rev. E 101, 032402 (2020), 2019 The ribosome is one of the largest and most complex macromolecular machines in living cells. It polymerizes a protein in a step-by-step manner as directed by the corresponding nucleotide sequence on the template messenger RNA (mRNA) and this process is referred to as `translation' of the genetic message encoded in the sequence of mRNA transcript.
arxiv +1 more source
Size, shape, and flexibility of RNA structures
, 2006 Determination of sizes and flexibilities of RNA molecules is important in understanding the nature of packing in folded structures and in elucidating interactions between RNA and DNA or proteins.
Cantor C. R. +4 more
core +1 more source
PCR-Independent Detection of Bacterial Species-Specific 16S rRNA at 10 fM by a Pore-Blockage Sensor. [PDF]
, 2016 A PCR-free, optics-free device is used for the detection of Escherichia coli (E. coli) 16S rRNA at 10 fM, which corresponds to ~100-1000 colony forming units/mL (CFU/mL) depending on cellular rRNA levels.
Banda, Anisha +7 more
core +1 more source