Results 221 to 230 of about 183,216 (261)

PacBio full-length 16S rRNA gene sequencing processed with Emu and GTDB provides the highest taxonomic resolution for rumen bacteriome profiling. [PDF]

ISME Commun
Kim H, Zhou M, Lin L, Zhu W, McAllister TA, Guan LL.   +5 more
europepmc   +1 more source

Optimising Vaginal Microbiome Profiling for Clinical Translation: A Comparative Assessment of Sample Storage Methods and a Vagina-Specific 16S rRNA Gene Database. [PDF]

Microorganisms
Ali A, Keelan JA, Penova-Veselinovic B, Allentoft ME, Bunce M, Christophersen CT.   +5 more
europepmc   +1 more source

Blood Culture-Negative Infective Endocarditis Diagnosed via 16S rRNA Gene Amplicon Sequencing. [PDF]

JACC Case Rep
Arakawa M, Takada K, Shiba T, Nagai T, Ogane S, Shimokawa T, Katagiri S, Iwata T, Kozuma K, Kataoka A.   +9 more
europepmc   +1 more source

Identification of nasopharyngeal microbial dysbiosis in COVID-19 patients by 16S rRNA gene sequencing. [PDF]

Front Microbiol
Kardaras FS, Siatravani E, Tsilipounidaki K, Petinaki E, Hatzigeorgiou AG, Miriagou V.   +5 more
europepmc   +1 more source

Oral Microbiome and Edentulism During Pregnancy: 16S rRNA Gene Analysis of an Indigenous Community-A Pilot Study. [PDF]

Microorganisms
Vásquez-Toasa P, Fernández-Cadena JC, Andrade-Molina D.   +2 more
europepmc   +1 more source

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16S rRNA Gene Analysis with QIIME2

2018
Microbial marker-gene sequence data can be used to generate comprehensive taxonomic profiles of the microorganisms present in a given community and for other community diversity analyses. The process of going from raw gene sequences to taxonomic profiles or diversity measures involves a series of data transformations performed by numerous computational
Michael, Hall, Robert G, Beiko
openaire   +2 more sources

Phylogeny of hagfish based on the mitochondrial 16S rRNA gene

Molecular Phylogenetics and Evolution, 2003
The phylogenetic relationships among the species belonging to the family Myxinidae are still debatable. The mitochondrial DNA sequences from the large ribosomal RNA gene may be of great value for systematic and phylogenetic studies within families. Partial sequences of the 16S rRNA gene were obtained for comparisons among the following hagfish species,
Chien-Hsien, Kuo, Shong, Huang, Sin-Che, Lee   +2 more
openaire   +2 more sources

Copy number of the 16S rRNA gene in Coxiella burnetii

European Journal of Epidemiology, 1997
Coxiella burnetii is an obligate intracellular bacterium with a doubling time of 5-7 hours. Chromosomal DNA from C. burnetii was digested with various restriction enzymes previously determined to not cut within the genomic 16S rRNA gene, or with a combination of these noncutting enzymes in conjunction with AflIII, a restriction enzyme that cuts twice ...
G, Afseth, L P, Mallavia
openaire   +2 more sources

Intravaginal microbial flora by the 16S rRNA gene sequencing

American Journal of Obstetrics and Gynecology, 2011
Conventional diagnosis of bacterial vaginosis contains some controversial points. To understand accurately the relationship between clinical stages and the microbiotas, the intravaginal microbial flora was analyzed by the clone library method.Vaginal fluid samples from 31 patients were examined. Lactobacillary grade, Nugent score, culture-based method,
Kazuaki, Yoshimura, Nobuo, Morotomi, Kazumasa, Fukuda, Masahiro, Nakano, Masamichi, Kashimura, Toru, Hachisuga, Hatsumi, Taniguchi   +6 more
openaire   +2 more sources