Predicting DNA-binding sites of proteins from amino acid sequence
BMC Bioinformatics, 2006 Background Understanding the molecular details of protein-DNA interactions is critical for deciphering the mechanisms of gene regulation. We present a machine learning approach for the identification of amino acid residues involved in protein-DNA ...
Wu Feihong +5 more
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Distributed Representation of Protein Sequence Based on Multi-Alignment Results
Tehnički Vjesnik, 2020 Protein sequence representation is a key problem for protein studies, especially for those sequence-based models. In this paper, a distributed representation model of protein sequence is proposed, which involves evolutionary information by introducing ...
Siqi Wang, Liu He, Shi Cheng, Xiaohu Shi
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Folding and Misfolding of Designed Heteropolymer Chains with Mutations
, 1997 We study the impact of mutations (changes in amino acid sequence) on the thermodynamics of simple protein-like heteropolymers consisting of N monomers, representing the amino acid sequence. The sequence is designed to fold into its native conformation on
Broglia, R. A. +4 more
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Amino acid sequence elucidation of human acrosin-trypsin inhibitor (HUSI-II) reveals that Kazal-type proteinase inhibitors are structurally related to β-subunits of glycoprotein hormones [PDF]
, 1990 The amino acid sequence of the acrosin-trypsin inhibitor HUSI-II from human seminal plasma is presented which unequivocally identifies HUSI-II as being of Kazal-type.
Eulitz, Manfred +2 more
core +1 more source
Purification tags markedly affect self‐aggregation of CPEB3
FEBS Letters, EarlyView.Although recombinant proteins are used to study protein aggregation in vitro, uncleaved tags can interfere with accurate interpretation. Our findings demonstrate that His₆‐GFP and His₁₂ tags significantly affect liquid droplet and amyloid fibril formation in the intrinsically disordered region (IDR) of mouse cytoplasmic polyadenylation element‐binding ...
Harunobu Saito +6 more
wiley +1 more source
Amino acid impact factor. [PDF]
PLoS ONE, 2018 Amino acid mutations in proteins are random and those mutations which are beneficial or neutral survive during the course of evolution. Conservation or co-evolution analyses are performed on the multiple sequence alignment of homologous proteins to ...
C K Sruthi, Meher Prakash
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Cloning and sequence analysis of cDNAs encoding the cytosolic precursors of subunits GapA and GapB of chloroplast glyceraldehyde-3-phosphate dehydrogenase from pea and spinach [PDF]
, 1989 Chloroplast glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is composed of two different subunits, GapA and GapB. cDNA clones containing the entire coding sequences of the cytosolic precursors for GapA from pea and for GapB from pea and spinach have ...
F Sanger +35 more
core +1 more source
FEBS Letters, EarlyView.This study reveals how prime editing guide RNA (pegRNA) secondary structure and reverse transcriptase template length affect prime editing efficiency in correcting the phospholamban R14del cardiomyopathy‐associated mutation. Insights support the design of structurally optimized enhanced pegRNAs for precise gene therapy.
Bing Yao +7 more
wiley +1 more source
Isolation and characterization of cDNA clones corresponding to two different human apoC-III alleles.
Journal of Lipid Research, 1985 We have recently reported that the human apolipoprotein A-I (apoA-I) and apolipoprotein C-III (apoC-III) genes are physically linked and that the presence of a DNA insertion in the apoA-I gene is correlated with apoA-I-apoC-III deficiency in patients ...
S K Karathanasis +2 more
doaj
Application of amino acid occurrence for discriminating different folding types of globular proteins
BMC Bioinformatics, 2007 Background Predicting the three-dimensional structure of a protein from its amino acid sequence is a long-standing goal in computational/molecular biology.
Gromiha M Michael, Taguchi Y-h
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