Results 61 to 70 of about 1,719,666 (251)

Exploring hydrophilic sequence space to search for uncharted foldable proteins by AlphaFold2

Biophysics and Physicobiology
Proteins typically fold into unique three-dimensional structures largely driven by interactions between hydrophobic amino acids. This understanding has helped improve our knowledge of protein folding.
Naoki Tomita, Hiroki Onoda, Leonard M. G. Chavas, George Chikenji   +3 more
doaj   +1 more source

Complete Genome Sequence Analysis of a Dengue Case Co-Infected with Type I and Type II Imported into Jiaxing in 2023

Microbiology Research
In 2023, one case of coinfection with type I and type II dengue virus of imported origin was first reported in Jiaxing city. Therefore, we analysed the results of the molecular tracing analysis of this case.
Yamei Zhou, Shencong Lv, Hao Yan, Ganglin Ren, Yin Song, Jimei Jj, Lina Li, Yong Yan, Guoying Zhu   +8 more
doaj   +1 more source

The amino acid sequence of peanut agglutinin [PDF]

European Journal of Biochemistry, 1991
The amino acid sequence of peanut (Arachis hypogaea) agglutinin was determined from three major fragments obtained by mild acid cleavage at Asp‐Pro peptide bonds. The sequence of 236 amino acids has residues identical to those that form the metal‐binding site and the hydrophobic pocket in concanavlin A and other lectins, although the overall similarity
Young, N., Johnston, R., Watson, David
openaire   +3 more sources

Value of eight-amino-acid matches in predicting the allergenicity status of proteins: an empirical bioinformatic investigation [PDF]

, 2009
The use of biotechnological techniques to introduce novel proteins into food crops (transgenic or GM crops) has motivated investigation into the properties of proteins that favor their potential to elicit allergic reactions.
Rod A Herman, Ping Song, Arvind ThirumalaiswamySekhar, Codex Alimentarius Commission, GS Ladics, FAO/WHO (World Health Organization), S Schnell, SJ Maleki, SK Sathe, RA Herman, RA Herman, T-J Fu, A Silvanovich, MB Stadler, RE Goodman, K Thomas, RF Cressman, RE Goodman, MW Kennedy, M Ishikawa, I Swoboda, P Spuergin, M Wallner, T Sone, LM Joseph, DR Hoffman, H Matsuo, E Klinglmayr, WR Pearson, H Breiteneder, H-D Shen, F Ferreir, S Clouier, C Sordet, RE Hileman   +34 more
core   +2 more sources

THE AMINO ACID SEQUENCE OF BOVINE CARBOXYPEPTIDASE A [PDF]

Proceedings of the National Academy of Sciences, 1969
The amino acid sequence of the four fragments produced by treatment of bovine carboxypeptidase A with cyanogen bromide has been completed. The alignment of these fragments, previously established by peptic digest of the whole protein, allows for the description of the complete primary structure of the molecule.
R A, Bradshaw, L H, Ericsson, K A, Walsh, H, Neurath   +3 more
openaire   +2 more sources

Neural Network and Bioinformatic Methods for Predicting HIV-1 Protease Inhibitor Resistance [PDF]

, 2007
This article presents a new method for predicting viral resistance to seven protease inhibitors from the HIV-1 genotype, and for identifying the positions in the protease gene at which the specific nature of the mutation affects resistance.
Carpenter, Gail A., Woods, Matthew
core   +1 more source

Targeting of the hepatitis B virus precore protein to the endoplasmic reticulum membrane: after signal peptide cleavage translocation can be aborted and the product released into the cytoplasm. [PDF]

, 1988
The major hepatitis B virus (HBV) core protein is a viral structural protein involved in nucleic acid binding. Its coding sequence contains an extension of 29 codons (the "precore" region) at the amino terminus of the protein which is present in a ...
Garcia, PD, Ou, JH, Rutter, WJ, Walter, P   +3 more
core  

Evidence of Divergent Amino Acid Usage in Comparative Analyses of R5- and X4-Associated HIV-1 Vpr Sequences

International Journal of Genomics, 2017
Vpr is an HIV-1 accessory protein that plays numerous roles during viral replication, and some of which are cell type dependent. To test the hypothesis that HIV-1 tropism extends beyond the envelope into the vpr gene, studies were performed to identify ...
Gregory C. Antell, Will Dampier, Benjamas Aiamkitsumrit, Michael R. Nonnemacher, Vanessa Pirrone, Wen Zhong, Katherine Kercher, Shendra Passic, Jean Williams, Yucheng Liu, Tony James, Jeffrey M. Jacobson, Zsofia Szep, Brian Wigdahl, Fred C. Krebs   +14 more
doaj   +1 more source

Amino acid "little Big Bang": Representing amino acid substitution matrices as dot products of Euclidian vectors

BMC Bioinformatics, 2010
Background Sequence comparisons make use of a one-letter representation for amino acids, the necessary quantitative information being supplied by the substitution matrices.
Zimmermann Karel, Gibrat Jean-François
doaj   +1 more source

ANCAC: amino acid, nucleotide, and codon analysis of COGs – a tool for sequence bias analysis in microbial orthologs

BMC Bioinformatics, 2012
Background The COG database is the most popular collection of orthologous proteins from many different completely sequenced microbial genomes. Per definition, a cluster of orthologous groups (COG) within this database exclusively contains proteins that ...
Meiler Arno, Klinger Claudia, Kaufmann Michael   +2 more
doaj   +1 more source