Results 101 to 110 of about 860,088 (184)

PacBio amplicon sequencing of Cordyceps species

Data of high-throughput ITS-D1/D2 LSU amplicon sequencing, using double ...
Kobmoo, Noppol
core   +1 more source

EMA-amplicon-based sequencing informs risk assessment analysis of water treatment systems.

, 2020
Illumina amplicon-based sequencing was coupled with ethidium monoazide bromide (EMA) pre-treatment to monitor the total viable bacterial community and subsequently identify and prioritise the target organisms for the health risk assessment of the ...
W Khan (7798460), KA Hamilton (9469235), Kevin McGuigan (7895738), B Reyneke (9469136), MI Polo-López (7441739), S Khan (4816692), P Fernández-Ibáñez (7441745)   +6 more
core   +1 more source

AmpliRAD: A new method combining amplicon and RAD sequencing

Ecology and Evolution
Reduced-representation sequencing methods, such as Restriction-site Associated DNA sequencing (RAD-seq), use restriction enzymes to achieve a cost-effective approach for generating genome-wide SNP data. However, a major limitation of these methods is their inability to directly assay specific loci of interest unless located near restriction sites. Here,
Tasha Q. Thompson, Michael R. Miller, Matthew R. Sloat   +2 more
openaire   +2 more sources

Development and application of a whole genome amplicon sequencing method for infectious salmon anemia virus (ISAV)

Frontiers in Microbiology
Infectious salmon anemia (ISA) is an infectious disease primarily affecting farmed Atlantic salmon, Salmo salar, which is caused by the ISA virus (ISAV). ISAV belongs to the Orthomyxoviridae family. The disease is a serious condition resulting in reduced
Bjørn Spilsberg, Magnus Leithaug, Debes Hammershaimb Christiansen, Maria Marjunardóttir Dahl, Petra Elisabeth Petersen, Karin Lagesen, Eve M. L. Z. Fiskebeck, Torfinn Moldal, Mette Boye   +8 more
doaj   +1 more source

Ten simple rules for implementing deep amplicon sequencing in parasitology

Deep amplicon sequencing is transforming parasitology by enabling high-throughput profiling of parasite communities and detection of resistance-associated genetic variants. Despite its growing adoption, many researchers face challenges in implementation,
Albuquerque, ACA, Bassetto, CC, Robleto-Quesada, J, Colella, V, Jabbar, A, Chambers, A, von Samson-Himmelstjerna, G, de Sousa-Paula, LC, Karani, BE, Gilleard, JS, Nielsen, MK, Bartley, DJ, McEvoy, A, Melville, LA, Maté, L, Evans, M, Ghafar, A, Pafčo, B, Costa-Junior, LM, Mohammedsalih, KM, Hayashi, N, Jones, RA, Helal, MA, Huggins, LG, Peachey, LE, Canton, C, Francis, EK, Godoy, P, Doyle, SR, Zahid, O, Byrne, O, Rojas, A, Šlapeta, J, Liron, JP, Krücken, J, Martínez-Valladares, M, Mulcahy, G   +36 more
core   +1 more source

Deciphering intra-species bacterial diversity using gyrB amplicon sequencing [PDF]

, 2019
Présentation le 4 juillet 2019Deciphering intra-species bacterial diversity using [i]gyrB[/i] amplicon sequencing. JOBIM 2019.
Rué, Olivier
core   +1 more source

16S rRNA amplicon sequencing of organic and conventional chickens

Microbiology Resource Announcements
ABSTRACT We report 16S rRNA sequencing of microbiomes associated with organic and conventional retail chickens ( n =31), processed via whole-carcass enrichment and rinse methodologies.
Anuradha J. Punchihewage-Don, Nur A. Hasan, Salina Parveen   +2 more
openaire   +2 more sources

Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data

, 2014
International audienceAbstract Motivation: Because of its low cost, amplicon sequencing, also known as ultra-deep targeted sequencing, is now becoming widely used in oncology for detection of actionable mutations, i.e.
Gestraud, Pierre, Le Tourneau, Christophe, Boeva, Valentina, Barillot, Emmanuel, Rio Frio, Thomas, Toffoli, Sebastien, Servant, Nicolas, Popova, Tatiana, Hupé, Philippe, Lienard, Maxime, Gentien, David, Laes, Jean-François, Kamal, Maud   +12 more
core   +1 more source

An amplicon-based sequencing approach for Usutu virus characterization

Virology Journal
AbstractUsutu virus (USUV), an arbovirus from the Flaviviridae family, genus Flavivirus, has recently gained increasing attention because of its potential for emergence. After his discovery in South Africa, USUV spread to other African countries, then emerged in Europe where it was responsible for epizootics.
Ndione, Marie Henriette Dior, Diagne, Moussa Moïse, Mencattelli, Giulia, Diallo, Amadou, Ndiaye, El Hadji, Di Domenico, Marco, Diallo, Diawo, Kane, Mouhamed, Curini, Valentina, Top, Ndeye Marieme, Marcacci, Maurilia, Sankhe, Safiétou, Ancora, Massimo, Secondini, Barbara, Di Lollo, Valeria, Teodori, Liana, Leone, Alessandra, Puglia, Ilaria, Gaye, Alioune, Sall, Amadou Alpha, Loucoubar, Cheikh, Rosà, Roberto, Diallo, Mawlouth, Monaco, Federica, Faye, Ousmane, Cammà, Cesare, Rizzoli, Annapaola, Savini, Giovanni, Faye, Oumar   +28 more
openaire   +3 more sources

Genotyping Plasmodium falciparum gametocytes using amplicon deep sequencing

Malaria Journal
Background Understanding the dynamics of gametocyte production in polyclonal Plasmodium falciparum infections requires a genotyping method that detects distinct gametocyte clones and estimates their relative frequencies. Here, a marker was identified and
Jimmy Vareta, Natalie A. Horstman, Matthew Adams, Karl B. Seydel, Robert S. McCann, Lauren M. Cohee, Miriam K. Laufer, Shannon Takala-Harrison   +7 more
doaj   +1 more source