Results 111 to 120 of about 860,088 (184)

ASTA-Seq (Allele-Specific Targeted Amplicon Sequencing)

<p>ASTA-Seq (Allele-Specific Targeted Amplicon Sequencing) is an automatical pipeline implemented in two Perl scripts to extract and summarize information from FASTQ reads containing information about the allele-specific (hydroxy)methylation status
Mercedes, Barrero, Enrique, Blanco
core   +1 more source

Complete pipeline for Oxford Nanopore Technology amplicon sequencing (ONT‐AmpSeq): from pre‐processing to creating an operational taxonomic unit table

FEBS Open Bio
Amplicon sequencing has long served as a robust method for characterising microbial communities, and despite inherent resolution limitations, it remains a preferred technique, offering cost‐ and time‐effective insights into bacterial compositions.
Patrick Skov Schacksen, Stine Karstenskov Østergaard, Mathias Helmer Eskildsen, Jeppe Lund Nielsen   +3 more
doaj   +1 more source

ARTIC RSV amplicon sequencing reveals global RSV genotype dynamics

This repository contains the consensus sequences generated for the study "ARTIC RSV amplicon sequencing reveals global RSV genotype dynamics". The fasta sequence headers are in the following format: > Seq_ID | Sequencing_run | Collection_year ...
Mateo, Carvajal, Weixler, Amelia, Guevara, Rommel, Wang, Xiong, Gabrial, Gonzalez, Carr, Michael, Fanning, Padraic M, History, Dewar, Rebecca, Sereewit, Jaydee, Nunley, B Ethan, Amelia, Weixler, Daniel, Hare, Pavitra, Roychoudhury, Tanmoy, Arif, Paúl, Cárdenas, Kunerth, Henry D, Namugenyi, Sarah, MRC Human Genetics Unit, Carlos, Fernandez Juan, Centre for Reproductive Health, Templeton, Kate, Carvajal, Mateo, Alex, Greninger, Sharma, Aryan, School of Neurological and Cardiovascular Sciences, Rebecca, Dewar, Jasim, Seema, Marshal, Louise, Royal (Dick) School of Veterinary Studies, Xie, Hong, Fries, Anthony C, O'Toole, Áine, Patrick, McClure, Cárdenas, Paúl, McClure, Patrick, School of Regeneration and Repair, Guy's and St Thomas' NHS Foundation Trust, Xiong, Wang, Loose, Matt, Maloney, Daniel, Universidad San Francisco de Quito, School of History, Classics and Archaeology, Fernandes, Goncalo, Meyer, Jennifer R, Fernandez, Juan Carlos, Greninger, Alex, School of Biological Sciences, NHS Lothian, Hare, Daniel, Rommel, Guevara, Nebbai, Gaia, Padraic, Fanning M, Benítez, Denisse, School of Population Health Sciences, Rambaut, Andrew, Gonzalez, Gabrial, Roychoudhury, Pavitra, Minnesota Department of Health, Senjuti, Saha, Lanter, Kelsey, University of Nottingham, Saha, Senjuti, Williams, Tom, Sarah, Namugenyi, University of Washington, Williams, Thomas, School of Informatics, University College Dublin   +68 more
core   +1 more source

Rapid Amplicon ONT Sequencing v1

This protocol enables rapid sequencing of amplicon DNA ranging from 500 bp to 5 kb. It supports sequencing of up to 96 amplicons and includes steps from DNA extraction and PCR amplification using two barcoding stages, to final sequencing.
openaire   +1 more source

Data Standards for Multiplex Amplicon Sequencing

Talk on Data Standards for Multiplex Amplicon Sequencing. 
openaire   +1 more source

Upscaling Genotyping by Amplicon Sequencing With GBAS-GUI. [PDF]

Mol Ecol Resour
Sonnenberg S, Vijayan T, Rupprecht C, Krenn YP, Gruber M, Dorfer H, Kwikiriza G, Meimberg H, Curto M.   +8 more
europepmc   +1 more source

Soil experiment-16S rRNA gene amplicon sequencing

To investigate the response of rhizobacteria communities to soil suspension under different phosphate conditions, rhizosphere soil samples from Col-0 and fer-4 grown in HP-T-SS or LP-T-SS were collected for soil experiment 16S rRNA gene amplicon ...
Zhang, Lingyun
core   +1 more source

Benchmarking Denoising Strategies and Nucleic Acid Templates for ITS2 Amplicon Sequencing of Gut Mycobiome. [PDF]

FASEB J
Dai T, Dai Y, Bai J, Li W, Chen P.
europepmc   +1 more source

A highly sensitive amplicon sequencing workflow for genomic surveillance of Usutu virus. [PDF]

Virol J
Tóth GE, Nagy A, Costales JA, Camacho MA, Burneo SF, Petersen M, Bialonski A, Baum H, Horváth B, Heitmann A, Lühken R, Schmidt M, Schmidt-Chanasit J, Tauber Z, Cadar D.   +14 more
europepmc   +1 more source

16S amplicon sequencing for Franklin et al.

This is the 16S amplicon sequencing data for Franklin et al. (submitted)THIS DATASET IS ARCHIVED AT DANS/EASY, BUT NOT ACCESSIBLE HERE.
Hsu, B (via Mendeley Data)
core   +1 more source