Results 161 to 170 of about 176,761 (289)

High‐quality genome of elite peanut cultivar ZH05 reveals subgenome asymmetry, pan‐genome diversity, and breeding insights

Journal of Integrative Plant Biology, EarlyView.
A high‐quality reference genome for the elite peanut cultivar Zhonghua No. 5 revealed differing evolutionary paths between the two peanut subgenomes. SubA has higher overall gene expression and more open chromatin, whereas SubB has stronger structural organization, higher DNA methylation, and greater adaptive diversity associated with peanut evolution ...
Taihua Yang, Nian Liu, Li Huang, Jianbin Guo, Xiaomeng Xue, Mingjun Wang, Xiaohan Zhang, Chengtao Quan, Enyou Feng, Jiazhuang Tan, Zhenzhen Zhang, Yu You, Youlin Xia, Dongxin Huai, Yuning Chen, Liyin Yan, Kede Liu, Huifang Jiang, Yong Lei, Boshou Liao   +19 more
wiley   +1 more source

Plant cis‐regulatory grammar: Decoding the multidimensional code of transcriptional regulation for programmable crop engineering

Journal of Integrative Plant Biology, EarlyView.
This review decodes the grammar of plant cis‐regulatory elements, revealing that their function emerges from sequence, chromatin accessibility, 3D topology, and cell type context. It highlights how single‐cell omics, CRISPR dissection, and AI‐driven design converge to enable predictive engineering and crop improvement. ABSTRACT Cis‐regulatory elements (
Libin Zhang, Maoteng Li
wiley   +1 more source

ATAC-seq Protocol for Astrocytes v1

ATAC-seq Protocol for ...
openaire   +1 more source

Programmable Domestication: CRISPR, Pan‐Genomics and System Level Engineering for Next‐Generation Crops

Plant Biotechnology Journal, EarlyView.
Conceptual overview of programmable de novo domestication from genetic diversity discovery to crop deployment. The framework connects diverse germplasm and genomic resources with three trajectory pathways. Adaptive Rescue, Agronomic Refinement and Novel Chassis defined by biological distance, engineering complexity and breeding objectives.
Muhammad Mubashar Zafar, Hina Firdous, Ayesha Siddiqua, Ayesha Naveed, Abdul Razzaq, Sadam Munawar, Aqsa Ijaz, Zunaira Anwar, Sezai Ercisli, Xuefei Jiang, Qiao Fei   +10 more
wiley   +1 more source

ATAC-seq peaks that decrease in accessibility upon 30 minutes of TRPS1 depletion (blue dots in Fig 3A).

ATAC-seq peaks that decrease in accessibility upon 30 minutes of TRPS1 depletion (blue dots in Fig 3A).
Kizhakke Mattada Sathyan (10805433), Daniel Gioeli (155581), Michael J. Guertin (10805436), Thomas G. Scott (4092892)   +3 more
core   +1 more source

ATAC-seq peaks that increase in accessibility upon 30 minutes of TRPS1 depletion (red dots in Fig 3A).

ATAC-seq peaks that increase in accessibility upon 30 minutes of TRPS1 depletion (red dots in Fig 3A).
Kizhakke Mattada Sathyan (10805433), Daniel Gioeli (155581), Michael J. Guertin (10805436), Thomas G. Scott (4092892)   +3 more
core   +1 more source

Identifying improved sites for heterologous gene integration using ATAC-seq

, 2020
We analyzed the chromatin accessibility and nucleosome positioning by ATAC-seq of both null and transgene-expressing strains of Komagataella phaffii (Pichia pastoris) under different growth conditions.
Koch Institute (17856842)
core  

An Intronic Structural Variant in GhEBS1 Drives Cotton Fruit Size Divergence by Modulating Chromatin Accessibility and Gene Expression

Plant Biotechnology Journal, EarlyView.
ABSTRACT Fruit size is not only a crucial fitness trait in plant evolution but also an important agronomic target in crop domestication and improvement, yet its regulatory mechanisms remain poorly characterized. Here, we identified an F‐box E3 ubiquitin ligase gene, GhEBS1 (ENLARGED BOLL SIZE 1), as a positive regulator of cotton boll size via map ...
Furong Wang, Yu Chen, Zhangqiang Song, Ao Pan, Xuehan Huo, Jingxia Zhang, Yang Gao, Zhecheng Yuan, Mengchen Zhu, Mingyang Lei, Pei Zhang, Juan Zhou, Zhaohai Du, Shengli Wang, Jiaojiao Feng, Minghui Feng, Chuanban Li, Shoupu He, Tianzhen Zhang, Jun Zhang   +19 more
wiley   +1 more source

Combined Abiotic Stress Rewires DNA Methylation to Modulate Regulatory Potential Rather Than Transcription in Arabidopsis

Plant, Cell &Environment, EarlyView.
ABSTRACT Plants are simultaneously exposed to multiple abiotic stresses, yet how opposing epigenetic signals are integrated remains unclear. Here, we investigated the combined effects of heat stress and phosphate deficiency in Arabidopsis thaliana, two conditions with antagonistic impacts on DNA methylation.
Alberto Lozano‐Enguita, Adrián Morillas‐Montávez, Victoria Baca‐González, Jesús Pascual, Luis Valledor, Juan Carlos del Pozo, Elena Caro   +6 more
wiley   +1 more source

Sex‐Modulated TACSTD2 Methylation and Hormone‐Receptor Axis Interactions in Glioblastoma: Insights Toward Mechanistic Understanding

Computational and Systems Oncology, Volume 6, Issue 1, December 2026.
Sex‐stratified analyses of the TCGA and CGGA cohorts have identified promoter‐proximal TACSTD2 CpG sites where methylation shows opposite survival associations in males and females, is independent of copy number, and correlates with TACSTD2 expression.
Tahreem Fatima
wiley   +1 more source