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Capturing Chromatin Organization by MNase-seq and ATAC-seq
Hox genes play a pivotal role during development. Their expression is tightly controlled in a spatiotemporal manner, ensuring that specific body structures develop at the correct locations and times during development. Various genomics approaches have been used to capture temporal and dynamic regulation of Hox gene expression at the nucleosome ...Mika, Saotome +2 more
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AIAP: A Quality Control and Integrative Analysis Package to Improve ATAC-Seq Data Analysis
Genomics, Proteomics and Bioinformatics, 2021Shaopeng Liu, Daofeng Li, Cheng Lyu
exaly
CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-Seq Analysis
Genomics, Proteomics and Bioinformatics, 2021Xintao Qiu, Avery Feit, Yingtian Xie
exaly
DeNOPA: decoding nucleosome positions sensitively with sparse ATAC-seq data
Briefings in Bioinformatics, 2022Bingxiang Xu +2 more
exaly
SCARF: Single Cell ATAC-seq and RNA-seq Foundation model
bioRxivGuole Liu +9 more
semanticscholar +1 more source
Investigation of the effects of phthalates on in vitro thyroid models with RNA-Seq and ATAC-Seq
Frontiers in Endocrinology, 2023Marta Nazzari +2 more
exaly