Results 221 to 230 of about 186,580 (246)

An ATAC-seq protocol for neuroscience research

Anatomical Science International
ATAC-seq (assay for transposase-accessible chromatin using sequencing) enables high resolution mapping of chromatin accessibility, providing critical insights into gene regulatory mechanisms in neuroscience research. This protocol presents an optimized approach for applying ATAC-seq to neural tissues and cells, addressing the unique challenges of ...
N. Prince, Misako Hamamura, Yi Zhou, Yuki Fujita   +3 more
semanticscholar   +3 more sources

Dissecting the Epigenome Driving Drug Resistance by ATAC-Seq

2022
The transcription of each gene is tightly regulated by elements like promoters, enhancers, silencers and insulators. These elements determine the temporal and tissue-specific expression in development and disease. Drug resistance is the major obstacle in successfully treating cancer patients.
Francesca, de Nicola, Giacomo, Corleone, Frauke, Goeman   +2 more
openaire   +2 more sources

Prenet: Predictive network from ATAC-SEQ data

Journal of Bioinformatics and Computational Biology, 2020
Assays for transposase-accessible chromatin sequencing (ATAC-seq) provides an innovative approach to study chromatin status in multiple cell types. Moreover, it is also possible to efficiently extract differentially accessible chromatin (DACs) regions by using state-of-the-art algorithms (e.g.
Nazmus Salehin, Patrick P. L. Tam, Pierre Osteil   +2 more
openaire   +2 more sources

ATAC-Seq

ATAC-seq reads under different stress temperatures.
openaire   +1 more source

Exploring the Cancer Immune Epigenome by ATAC-Seq

The Assay for Transposase-Accessible Chromatin using sequencing (ATAC-seq) is a rapid and sensitive method for exploring the cancer immune epigenome. ATAC-seq captures open chromatin sites based on transposing the sequencing adapter directly into native chromatin in vitro.
Chunling, Zeng, Yuexiang, Wang
openaire   +2 more sources

atac-seq of down syndrome-derived aminocytes

2023
We performed Assay for transposase-accessible chromatin with high-throughout sequencing (ATAC-Seq) to explore the difference of chromatin accessibility in DS derived aminocytes (DSACs) versus Normal.
openaire   +1 more source

Laser-Capture Microdissection Followed by ATAC-Seq

Laser-capture microdissection (LCM) enables the collection of regions of interest from target tissues, making it compatible with a number of spatially resolved downstream omics applications. Here, we provide a detailed protocol for LCM coupled to ATAC-seq (LCM-ATAC-seq) for the spatial analysis of chromatin landscape based on the method published by ...
Hartmann, Celia L, Schultze, Joachim L, Beyer, Marc D, Carraro, Caterina   +3 more
openaire   +3 more sources

ATAC-seq of human cell line, commercial

2023
HK-2 cells were treated with hyposia, and then were sequenced by ATAC-seq.
openaire   +1 more source

Omni-ATAC-seq: Improved ATAC-seq protocol

Protocol Exchange, 2017
M. Ryan Corces, M. Ryan Corces, Alexandro E. Trevino, Emily G. Hamilton, Peyton G. Greenside, Nicholas A Sinnott-Armstrong, Sam Vesuna, Ansuman T. Satpathy, Adam J. Rubin, Kathleen S. Montine, Beijing Wu, Arwa Kathiria, Seung Woo Cho, Maxwell R. Mumbach, Ava C. Carter, Maya Kasowski, Lisa A. Orloff, Viviana I. Risca, Anshul Kundaje, Paul A. Khavari, Thomas J. Montine, William J. Greenleaf, Howard Y. Chang   +22 more
openaire   +1 more source

[ATAC-seq and its applications in complex disease].

Yi chuan = Hereditas, 2020
ATAC-seq is a high-throughput technology that defines and quantifies chromatin accessibility by analyzing Tn5 transposase enzymes. ATAC-seq is used to map chromatin accessibility genome-wide and to identify regions of transcription-factor binding and nucleosome position.
Min, Chen, Zheng, Zhang, Zi Yuan, Meng, Xue Jun, Zhang   +3 more
openaire   +1 more source