Results 101 to 110 of about 32,113 (221)

PlantCTCIP: Chromatin Interaction Prediction Using Convolutional Neural Network and Transformer in Plants

Plant Biotechnology Journal, EarlyView.
ABSTRACT Chromatin interactions establish spatial proximity between distant regulatory elements and their target genes, significantly influencing gene expression, and phenotypic traits. In this study, we present a plant chromatin interaction prediction model called PlantCTCIP based on Convolutional Neural Networks and Transformer.
Zhenye Wang, Siyu Zhou, Ze Guo, Zilan Ning, Jiaqi Cai, Ran Zhao, Ao Xie, Quan Li, Jiangling Zhang, Yongsheng Zhao, Peizhang Li, Haiping Si, Jianbing Yan, Yong Peng, Jianxiao Liu   +14 more
wiley   +1 more source

OsbHLH064, an IVb bHLH Transcription Factor, Regulates Iron Homeostasis and Enhances Grain Fe Accumulation in Rice

Plant Biotechnology Journal, EarlyView.
ABSTRACT Iron (Fe) is an essential micronutrient for plant growth and development. The maintenance of Fe homeostasis relies on sophisticated regulatory networks where bHLH transcription factors play a key role. However, how these factors coordinate to regulate this vital process is not fully understood.
Fei Gao, Zhikai Zhu, Kaixin Xue, Zijing Fu, Jitong Yue, Na Zhang, Hongli Zhou, Yaqin Deng, Jing Zhou, Liuhui Kuang, Tao Yan, Lin Li, Christian Dubos, Dezhi Wu   +13 more
wiley   +1 more source

A Truncated WRKY Protein Enhances Drought Resistance in Wild Tomatoes Through the SlWRKY16‐CIP2b‐SlSYP121 Module

Plant Biotechnology Journal, EarlyView.
ABSTRACT Drought stress is a major abiotic factor that severely affects plant growth and food production. Identifying drought‐resistant genes and their regulatory mechanisms is essential for mitigating the negative impacts of drought on plants. In this study, we identified a natural single nucleotide polymorphism (SNP) mutation in SlWRKY16 that is ...
Yin Ding, Xuting Chen, Ke Wu, Huifang Hou, Yaling Wang, Bentao Yan, Muhammad Hafeez Ul Rehman Khursheed, Chunyu Shang, Xingguo Zhang, Yu Pan, Lang Wu, Jinhua Li   +11 more
wiley   +1 more source

Additional file 2 of Automatic annotation of the bHLH gene family in plants

Additional file 2: Detailed description of the identification of outgroup sequences and the optimisation of the sequence collections by thinning. The thinning process aims to generate a smaller set of sequences which still represents the diversity of bHLH ...
Thoben, Corinna, Pucker, Boas
openaire   +1 more source

The BAHD Acyltransferase Gene Family: Evolutionary Dynamics, Biochemical Mechanisms, and Roles in Plant Stress Adaptation

Plant Biotechnology Journal, EarlyView.
BAHD acyltransferases drive metabolic diversification in plants by coupling conserved catalytic scaffolds with regulatory flexibility, enabling stress adaptation and ecological specialisation. ABSTRACT BAHD acyltransferases constitute one of the most versatile enzyme superfamilies in plants, catalysing the acylation of alcohols, amines, polyamines, and
Muhammad Mubashar Zafar, Qiao Fei, Abdul Razzaq, Ayesha Siddiqua, Ayesha Naveed, M. Nasir Khan, Huma Saleem, Xuefei Jiang   +7 more
wiley   +1 more source

The Advantaged Salt Inducible Suaeda salsa SsNRT2.5 and Its Promoter Significantly Enhance Nitrate Transport Efficiency and Salt Tolerance in Transgenic Arabidopsis and Rice

Plant Biotechnology Journal, EarlyView.
ABSTRACT Efficient nitrogen (N) uptake is critical for crop yield, but soil salinization inhibits plant nitrogen acquisition. In this study, the nitrate (NO3−) transporter gene SsNRT2.5 and its promoter from the halophyte Suaeda salsa was investigated to elucidate the functional role in NO3− transport under salinity and low NO3−–N conditions.
Ranran Liu, Chenyang Li, Runtai Zhao, Congcong Song, Yan Zhou, Ruxin Zhao, Na Sui, Lei Wang, Jie Song   +8 more
wiley   +1 more source

Analysis of BpbHLH Gene Family Responsive to MeJA Signalling in Betula platyphylla Suk. and Functional Mechanisms of BpbHLH42/44 in Genetic Improvement and Triterpenoid Biosynthesis

Plant Biotechnology Journal, EarlyView.
ABSTRACT The basic helix–loop–helix (bHLH) transcription factor family regulates plant secondary metabolism, development and stress responses. Although triterpenoids such as betulinic acid (BA), betulin (BT) and oleanolic acid (OA) from Betula platyphylla Suk.
Ying Li, Linlin Xu, Jiale Cui, Siyao Wang, Yige Yuan, Changyixin Xiao, Xiaozhou Luo, Dmitry Baleev, Yaguang Zhan, Jing Yin   +9 more
wiley   +1 more source

Mechanical Strength: An Unrecognised Target in the Genetic Improvement of Crops

Plant Biotechnology Journal, EarlyView.
ABSTRACT Leaf angle (LA) is a crucial agronomic trait influencing planting density and crop yield. Previous research highlighted the importance of cellular variations in the ligular region for determining LA, but the underlying regulatory mechanisms remain unclear.
Qingbiao Shi, Qibin Wang, Guodong Wang, Yiduo An, Hengjia Yang, Qing Tao, Ying Xia, Zihao Jiao, Naiqian Li, Ran Gao, Junfen Li, Fanying Kong, Haisen Zhang, Pinghua Li, Mingyue Gou, Haiyang Wang, Bosheng Li, Gang Li   +17 more
wiley   +1 more source

Identification and Expression Analysis of Transcription Factor Family in Highland Barley Seedlings Under Na₂SeO₃ Treatment

Life
Transcription factors (TFs) are ubiquitously distributed in plants and play pivotal roles in regulating plant growth and development. The present study aims to elucidate the function of transcription factors (TFs) in highland barley’s response to ...
Xiaozhuo Wu, Feng Qiao, Guigong Geng, Jianxia Ma, Huichun Xie   +4 more
doaj   +1 more source

Genome-wide Survey of bHLH Super Gene Family in Brassica napus and Their Roles in Roots

, 2019
Abstract Background: Basic helix-loop-helix (bHLH) gene family is one of the largest transcription factors in plants and are functionally characterized in diverse species. However, less is known about their functions in the economically important allopolyploid oil crop, Brassica napus . Results : We identified 602 potential bHLHs in B.
Yunzhuo Ke, Yunwen Wu, Hongjun Zhou, Ping Chen, Mangmang Wang, Mingming Liu, Pengfeng Li, Jing Yang, Jiana Li, Hai Du   +9 more
openaire   +1 more source