Results 21 to 30 of about 23,754,274 (255)

Development of a novel and rapid phenotype-based screening method to assess rice seedling growth

Plant Methods, 2020
Background Rice (Oryza sativa) is one of the most important model crops in plant research. Despite its considerable advantages, (phenotypic) bioassays for rice are not as well developed as for Arabidopsis thaliana.
Lena Vlaminck, Chananchida Sang-Aram, Deborah Botterman, Christine Jewel C. Uy, Mary Kay Harper, Dirk Inzé, Godelieve Gheysen, Stephen Depuydt   +7 more
doaj   +1 more source

Prediction and Analysis in silico of Genomic Islands in Aeromonas hydrophila

Frontiers in Microbiology, 2021
Aeromonas are Gram-negative rods widely distributed in the environment. They can cause severe infections in fish related to financial losses in the fish industry, and are considered opportunistic pathogens of humans causing infections ranging from ...
Antonio Camilo da Silva Filho, Jeroniza Nunes Marchaukoski, Roberto Tadeu Raittz, Camilla Reginatto De Pierri, Diogo de Jesus Soares Machado, Cyntia Maria Telles Fadel-Picheth, Geraldo Picheth   +6 more
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Bi-directional gene set enrichment and canonical correlation analysis identify key diet-sensitive pathways and biomarkers of metabolic syndrome. [PDF]

, 2010
peer-reviewedBackground Currently, a number of bioinformatics methods are available to generate appropriate lists of genes from a microarray experiment.
Morine Melissa J, Aidan P Moloney, Toomey Sinead, Melissa J Morine, McMonagle, Jolene, Roche, Helen M., Gaora Peadar Ó, Moloney, Aidan P, Isobel C Gormley, Helen M Roche, O Gaora, Peadar, Peadar Ó Gaora, Roche Helen M, Moloney Aidan P, Reynolds Clare M, Sinead Toomey, Toomey, Sinead, Jolene McMonagle, Clare M Reynolds, Morine, Melissa J, McMonagle Jolene, Gormley, Isobel C, Gormley Isobel C, Reynolds, Clare M, Roche, Helen M, Gaora, Peadar Ó   +25 more
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Assembling highly repetitive Xanthomonas TALomes using Oxford Nanopore sequencing

BMC Genomics, 2023
Background Most plant-pathogenic Xanthomonas bacteria harbor transcription activator-like effector (TALE) genes, which function as transcriptional activators of host plant genes and support infection.
Annett Erkes, René P. Grove, Milena Žarković, Sebastian Krautwurst, Ralf Koebnik, Richard D. Morgan, Geoffrey G. Wilson, Martin Hölzer, Manja Marz, Jens Boch, Jan Grau   +10 more
doaj   +1 more source

Over-optimism in bioinformatics: an illustration [PDF]

, 2010
In statistical bioinformatics research, different optimization mechanisms potentially lead to "over-optimism" in published papers. The present empirical study illustrates these mechanisms through a concrete example from an active research field.
Arthur, Tenenhaus, Arthur Tenenhaus, Strimmer, Korbinian, Strimmer, K., Boulesteix, Anne-Laure, Monika, Jelizarow, Vincent Guillemot, Vincent, Guillemot, Tenenhaus, Arthur, Anne-Laure Boulesteix, Guillemot, Vincent, Monika Jelizarow, Jelizarow, Monika, Korbinian Strimmer, Anne-Laure, Boulesteix, Korbinian, Strimmer   +15 more
core   +1 more source

A systems biology design and implementation of novel bioinformatics software tools for high throughput gene expression analysis [PDF]

, 2009
This thesis was submitted for the degree of Doctor of Philosophy and awarded by Brunel University.Microarray technology has revolutionized the field of molecular biology by offering an efficient and cost effective platform for the simultaneous ...
Khan, Mohsin Amir Faiz
core   +5 more sources

Agents in Bioinformatics

, 2005
The scope of the Technical Forum Group (TFG) on Agents in Bioinformatics (BIOAGENTS) was to inspire collaboration between the agent and bioinformatics communities with the aim of creating an opportunity to propose a different (agent-based) approach to ...
LUCK M., Luck, M, Merelli, E, Luck, Michael; id_orcid, MERELLI, Emanuela   +4 more
core   +2 more sources

Network analysis of hepatocellular carcinoma liquid biopsies augmented by single-cell sequencing data

Frontiers in Genetics, 2022
Liquid biopsy, the analysis of body fluids, represents a promising approach for disease diagnosis and prognosis with minimal intervention. Sequencing cell-free RNA derived from liquid biopsies has been very promising for the diagnosis of several diseases.
Aram Safrastyan, Aram Safrastyan, Damian Wollny, Damian Wollny, Damian Wollny   +4 more
doaj   +1 more source

A comprehensive multi-omics analysis reveals molecular features associated with cancer via RNA cross-talks in the Notch signaling pathway

Computational and Structural Biotechnology Journal, 2022
The Notch signaling has an important role in multiple cellular processes and is related to carcinogenic process. To understand the potential molecular features of the crucial Notch pathway, a comprehensive multi-omics analysis is performed to explore its
Li Guo, Sunjing Li, Xiaoqiang Yan, Lulu Shen, Daoliang Xia, Yiqi Xiong, Yuyang Dou, Lan Mi, Yujie Ren, Yangyang Xiang, Dekang Ren, Jun Wang, Tingming Liang   +12 more
doaj   +1 more source

XML schemas for common bioinformatic data types and their application in workflow systems [PDF]

, 2006
Seibel PN, Krüger J, Hartmeier S, et al. XML schemas for common bioinformatic data types and their application in workflow systems. BMC Bioinformatics.
Krüger, Jan, Seibel Philipp N, Sven Hartmeier, Krüger Jan, Giegerich, R., Philipp N Seibel, Hartmeier Sven, Schwarzer Knut, Henning Mersch, Schwarzer, Knut, Seibel, Philipp N., Knut Schwarzer, Löwenthal Kai, Krüger, J., Dandekar, Th., Robert Giegerich, Giegerich, Robert, Jan Krüger, Dandekar, Thomas, Löwenthal, Kai, Mersch Henning, Hartmeier, S., Thomas Dandekar, Seibel, P. N., Krueger, Jan, Mersch, Henning, Löwenthal, K., Kai Löwenthal, Giegerich Robert, Schwarzer, K., Dandekar Thomas, Hartmeier, Sven, Mersch, H.   +32 more
core   +1 more source