Results 41 to 50 of about 541,804 (167)

Lipidomics Bioinformatics Analysis

, 2023
Untargeted and targeted lipidomics are two categories of lipidomics that are often used in combination for the discovery and quantification of differential lipid molecules. Untargeted lipidomics uses LC-MS and GC-MS technologies to unbiasedly detect the dynamic changes of all lipid molecules before and after the stimulation or disturbance in cells ...
openaire   +1 more source

Proteomic Analysis to Identify Tightly-Bound Cell Wall Protein in Rice Calli. [PDF]

, 2015
Rice is a model plant widely used for basic and applied research programs. Plant cell wall proteins play key roles in a broad range of biological processes. However, presently, knowledge on the rice cell wall proteome is rudimentary in nature.
Chen, Xiong Yan, Cho, Won Kyong, Hyun, Tae Kyung, Jo, Yeonhwa, Kim, Jae-Yean, Kim, Suwha, Kumar, Dhinesh, Lee, Keun Woo, Lucas, William J, Park, Zee-Yong, Rim, Yeonggil   +10 more
core   +1 more source

An Overview of the Use of Neural Networks for Data Mining Tasks [PDF]

, 2012
In the recent years the area of data mining has experienced a considerable demand for technologies that extract knowledge from large and complex data sources.
Alberts B, Alpaydin E, Ando T, Blake CL, Bramer MA, Castanheira LG, Han J, Lu H, Mitchell M, Ni X, Quinlan RJ, Rumelhart DE, Shafer JC, Shendure J, Simić D, Stahl F, Steinwart I, Surjandari I, Wei JS, Widrow B, Witten IH, Zaslavsky B, Zhang D   +22 more
core   +1 more source

Metabolomics Bioinformatics Analysis

, 2023
The basics of data processing are to convert the original data file into a representation to help easily access the characteristics of each observed ion. These characteristics include ion retention time and m/z time, as well as ion intensity measurements in each raw data file.
openaire   +1 more source

mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking. [PDF]

, 2016
Mock communities are an important tool for validating, optimizing, and comparing bioinformatics methods for microbial community analysis. We present mockrobiota, a public resource for sharing, validating, and documenting mock community data resources ...
Arron Shiffer, Benjamin Wolfe, Corinne F. Maurice, J. Gregory Caporaso, Jai Ram Rideout, Josh D. Neufeld, Nicholas A. Bokulich, Peter J. Turnbaugh, Rachel J. Dutton, Rob Knight, William G. Mercurio   +10 more
core   +3 more sources

Exploring the impact of primer length on efficient gene detection via high-throughput sequencing

Nature Communications
Reverse transcription (RT) is a crucial step in most RNA analysis methods. Optimizing protocols for this initial stage is critical for effective target detection, particularly when working with limited input RNA.
Julia Micheel, Aram Safrastyan, Franziska Aron, Damian Wollny   +3 more
doaj   +1 more source

GBCdb: RNA expression landscapes and ncRNA–mRNA interactions in gallbladder carcinoma

BMC Bioinformatics, 2023
Gallbladder carcinoma (GBC), an aggressive malignant tumor of the biliary system, is characterized by high cellular heterogeneity and poor prognosis. Fewer data have been reported in GBC than other common cancer types. Multi-omics data will contribute to
Li Guo, Yangyang Xiang, Yuyang Dou, Zibo Yin, Xinru Xu, Lihua Tang, Jiafeng Yu, Jun Wang, Tingming Liang   +8 more
doaj   +1 more source

Function‐driven design of a surrogate interleukin‐2 receptor ligand

FEBS Letters, EarlyView.
Interleukin (IL)‐2 signaling can be achieved and precisely fine‐tuned through the affinity, distance, and orientation of the heterodimeric receptors with their ligands. We designed a biased IL‐2 surrogate ligand that selectively promotes effector T and natural killer cell activation and differentiation. Interleukin (IL) receptors play a pivotal role in
Ziwei Tang, Zelin Cheng, Teng Li, Fulian Wang, Liangminghui Zhang, Xiuxiu He, Lili Liu, Wei Wang, Aibin Liang, Guang Yang   +9 more
wiley   +1 more source

Bioinformatic analysis v1

, 2019
Bioinformatics analysis The following analysis protocol describe Sequences processing and analysis section.
Rosangela Bevitori, Sanchari Sircar, Raquel Neves de Mello, Roberto Cotia Togawa, Tiago Silva Oliveira, Maria de Fátima Grossi de Sá, Nita Parekh   +6 more
openaire   +1 more source

PCA and K-Means decipher genome

, 2008
In this paper, we aim to give a tutorial for undergraduate students studying statistical methods and/or bioinformatics. The students will learn how data visualization can help in genomic sequence analysis.
A Zinovyev, AN Gorban, AN Gorban, AN Gorban, AY Zinovyev, FHC Crick, HY Ou, J Jackson, R Staden   +8 more
core   +2 more sources