Results 41 to 50 of about 2,458,031 (313)

Heterogeneity in pure microbial systems: experimental measurements and modeling [PDF]

, 2017
Cellular heterogeneity influences bioprocess performance in ways that until date are not completely elucidated. In order to account for this phenomenon in the design and operation of bioprocesses, reliable analytical and mathematical descriptions are ...
González-Cabaleiro, Rebeca, Mitchell, Anca M., Ofiţeru, Irina D., Smith, Wendy, Wipat, Anil   +4 more
core   +2 more sources

Hierarchical community structure in complex (social) networks [PDF]

, 2014
The investigation of community structure in networks is a task of great importance in many disciplines, namely physics, sociology, biology and computer science where systems are often represented as graphs.
Bagnoli, Franco, Massaro, Emanuele
core   +2 more sources

Reproducible chemostat cultures to minimize eukaryotic viruses from fecal transplant material

iScience
Summary: Recent studies indicate an important role of bacteriophages for successful fecal microbiota transplantation (FMT). However, wider clinical applications of FMT are hampered by to donor variability and concerns of infection risks by bacteria and ...
Signe Adamberg, Torben Sølbeck Rasmussen, Sabina Brigitte Larsen, Xiaotian Mao, Dennis Sandris Nielsen, Kaarel Adamberg   +5 more
doaj   +1 more source

Present Impact of AlphaFold2 Revolution on Structural Biology, and an Illustration With the Structure Prediction of the Bacteriophage J-1 Host Adhesion Device

Frontiers in Molecular Biosciences, 2022
In 2021, the release of AlphaFold2 - the DeepMind’s machine-learning protein structure prediction program - revolutionized structural biology. Results of the CASP14 contest were an immense surprise as AlphaFold2 successfully predicted 3D structures of ...
Adeline Goulet, Christian Cambillau, Christian Cambillau   +2 more
doaj   +1 more source

GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data [PDF]

, 2016
Background: Identification of gene expression profiles that differentiate experimental groups is critical for discovery and analysis of key molecular pathways and also for selection of robust diagnostic or prognostic biomarkers.
Gordon, SV, Hernández, B, MacHugh, DE, Magee, DA, McGettigan, PA, Nalpas, NC, Parnell, AC, Rue-Albrecht, K   +7 more
core   +4 more sources

Parameter estimation and inference for stochastic reaction-diffusion systems: application to morphogenesis in D. melanogaster [PDF]

, 2010
Background: Reaction-diffusion systems are frequently used in systems biology to model developmental and signalling processes. In many applications, count numbers of the diffusing molecular species are very low, leading to the need to explicitly model ...
Dewar, M.A., Kadirkamanathan, V., Opper, M., Sanguinetti, G.   +3 more
core   +4 more sources

Transkingdom Networks: A Systems Biology Approach to Identify Causal Members of Host-Microbiota Interactions

, 2017
Improvements in sequencing technologies and reduced experimental costs have resulted in a vast number of studies generating high-throughput data. Although the number of methods to analyze these "omics" data has also increased, computational complexity ...
A Fuente de la, A Morgun, A Morgun, A Mortazavi, A Perez-Diez, A Yambartsev, AR Erickson, AR Joyce, B Buchfink, B Langmead, BJ Haas, C Trapnell, CL Poirel, CL Schoch, DH Huson, DJ Lane, DJ McCarthy, E Saccenti, E Stackebrandt, ER Mardis, F Imhann, F Meyer, Gautier, J Kuczynski, J Skinner, JG Caporaso, JL Brookman, JN Paulson, KL Mine, LD Thomas, M Martin, M Schirmer, MA Moreno-Risueno, ML Metzker, N Gehlenborg, N Krumm, N Segata, N Shulzhenko, O Morozova, P Li, PD Schloss, PW Laird, R Greer, R Schmieder, Ritchie, RL Greer, RR Rodrigues, S Anders, S Goodwin, S Lindgreen, S Weiss, S Zhao, SC Schuster, TJ Sharpton, W Zhang, X Dong, YJ Hua   +56 more
core   +1 more source

Genomic Transformation of the Picoeukaryote Ostreococcus tauri [PDF]

, 2012
Common problems hindering rapid progress in Plant Sciences include cellular, tissue and whole organism complexity, and notably the high level of genomic redundancy affecting simple genetics in higher plants. The novel model organism Ostreococcus tauri is
Bouget, François-Yves, Kis, Katalin, Knox, Kirsten, Millar, Andrew J, van Ooijen, Gerben   +4 more
core   +1 more source

Multiplexed CRISPR gene editing in primary human islet cells with Cas9 ribonucleoprotein

iScience
Summary: Successful genome editing in primary human islets could reveal features of the genetic regulatory landscape underlying β cell function and diabetes risk.
Romina J. Bevacqua, Weichen Zhao, Emilio Merheb, Seung Hyun Kim, Alexander Marson, Anna L. Gloyn, Seung K. Kim   +6 more
doaj   +1 more source

Myosin VI depletion delays neuromuscular junction maturation and exacerbates muscle performance

Scientific Reports
Unconventional myosin VI (MVI) is an ATP-dependent actin-binding molecular motor that participates in numerous cellular and tissue functions, including striated muscle physiology.
Jolanta Nowak, Paloma Alvarez-Suarez, Tomasz Włodarczyk, Renata Zakrzewska, Paweł Marek Boguszewski, Maria Jolanta Rędowicz, Marta Gawor   +6 more
doaj   +1 more source