Results 71 to 80 of about 12,609 (222)

Hierarchical clustering of CAZy genes.

, 2015
CAZy sequences were mapped against transcriptome reads and divided into 5 transcript groups according to expression levels. Group IV contains the most highly expressed sequences, and group I contains the sequences with the lowest expression.
Lilian Luzia Beloti (716566), Danilo Augusto Sforça (716563), Marcelo Augusto Szymanski de Toledo (716567), Maria Augusta Crivelente Horta (523958), Américo José Carvalho Viana (716565), Reginaldo Massanobu Kuroshu (523963), Michel Vincentz (271560), Anete Pereira de Souza (521749), Aline Crucello (523961), Clelton Aparecido dos Santos (716564)   +9 more
core   +1 more source

Mining the biomass deconstructing capabilities of rice yellow stem borer symbionts

Biotechnology for Biofuels, 2019
Background Efficient deconstruction of lignocellulosic biomass into simple sugars in an economically viable manner is a prerequisite for its global acceptance as a feedstock in bioethanol production.
Rahul Singh, Joseph P. Bennett, Mayank Gupta, Medha Sharma, Danish Eqbal, Anna M. Alessi, Adam A. Dowle, Simon J. McQueen-Mason, Neil C. Bruce, Syed Shams Yazdani   +9 more
doaj   +1 more source

A Metagenome‐Assembled Genome Catalog From the Global Ruminant Microbiomes

Animal Research and One Health, EarlyView.
The Ruminant Gastrointestinal MAG Catalog (RGMC) is a comprehensive global resource offering 40,812 strain‐level genomes across 53 bacterial and 4 archaeal classes. It greatly surpasses prior efforts in scale and diversity, serving as an essential foundation for research in ruminant nutrition, microbial function, and methane mitigation.
Shizhe Zhang, Qiushuang Li, Bingzi Ouyang, Wenxing Wang, Xiang Zhou, Xiumin Zhang, Rong Wang, Zhiliang Tan, Min Wang   +8 more
wiley   +1 more source

Comparison of GH43 genes found by PPR and annotated in CAZy.

, 2014
aTwo CAZy hits to one PPR hit.Comparison of GH43 genes found by PPR and annotated in CAZy.
Peter K. Busk (668391), Mette Lange (668392), Bo Pilgaard (668393), Lene Lange (668394)   +3 more
core   +1 more source

Inverting family GH156 sialidases define an unusual catalytic motif for glycosidase action

Nature Communications, 2019
Sialidases are glycoside hydrolases that cleave sialosides. Here the authors define the 3-D structure, alone and in complex with products and inhibitors, of the CAZy family GH156 sialidase, EnvSia156, showing it displays a catalytical (β/α) 8-barrel ...
Pedro Bule, Léa Chuzel, Elena Blagova, Liang Wu, Melissa A. Gray, Bernard Henrissat, Erdmann Rapp, Carolyn R. Bertozzi, Christopher H. Taron, Gideon J. Davies   +9 more
doaj   +1 more source

Stage‐Dependent Metabolic Reprogramming Drives a Self‐Organizing Microbial Network During Shanxi Aged Vinegar

Food Bioengineering, EarlyView.
Metabolic shifts from growth to stress adaptation in Shanxi aged vinegar fermentation link flavor maturation and microbial cooperation, and Lactobacillus and Acetobacter form a self‐organizing metabolic network through division of labor. ABSTRACT Acetic acid fermentation (AAF) is a vital stage in the production of Shanxi aged vinegar (SAV), during ...
Yanfang Wu, Jing Liu, Dantong Liu, Menglei Xia, Jia Song, Yu Zheng, Min Wang   +6 more
wiley   +1 more source

Expression of CAZy genes in L. maculans ‘brassicae’ and L. biglobosa ‘canadensis.’

, 2014
RNA-seq derived gene expression values were mapped onto the identified CAZy domains for Lmb and Lbc. Average expression levels (FPKM) were then calculated for each major class of CAZy.
Jonathan Grandaubert (531719), Bethany L. Clark (605308), Thierry Rouxel (121874), Andrew Cassin (468300), Rohan G. T. Lowe (330781), Angela P. Van de Wouw (238188), Barbara J. Howlett (209058)   +6 more
core   +1 more source

Investigating diversity and similarity between CBM13 modules and ricin-B lectin domains using sequence similarity networks

BMC Genomics
Background The CBM13 family comprises carbohydrate-binding modules that occur mainly in enzymes and in several ricin-B lectins. The ricin-B lectin domain resembles the CBM13 module to a large extent.
Tibo De Coninck, Garry P. Gippert, Bernard Henrissat, Tom Desmet, Els J.M. Van Damme   +4 more
doaj   +1 more source

Majorbio Cloud 2026 Update: An End‐to‐End Solution for Proteomics Research

iMetaMed, EarlyView.
The recent upgrade of Majorbio Cloud facilitates a more streamlined and accurate research process, aiding researchers across the various proteomics subfields. Furthermore, it propels the advancement of multi‐layered, multi‐omics scientific investigations centered around proteins.
Caiping Shi, Chang Han, Jichen Han, Bing Yang, Yachen Dong, Jianhua Zhao, Binxu Liu, Rundong Fang, Wenyao Fu, Jiawen Ma, Meng Luo, Lixing Feng, Yitong Feng, Huimin Cui, Mengxi Li, Huasheng Huang, Xianglin Zhang, Kegang Yu   +17 more
wiley   +1 more source

Gut microbiome seasonality is associated with dietary plasticity and coexistence in three sympatric Pamir ungulates

iMetaOmics, EarlyView.
This graphical abstract outlines a multi‐omics framework investigating the seasonal dietary composition and gut microbial communities of three coexisting ungulate species inhabiting the extreme high‐altitude Pamir Plateau (Ovis ammon polii, Capra sibirica, and Pseudois nayaur). By integrating dietary DNA metabarcoding, 16S rRNA gene sequencing, shotgun
Dilala Tuoliu, Lijiao Zhang, Muyang Wang, Wenxuan Xu, Kathreen Ruckstuhl, António Alves da Silva, Joana Alves, Hongchen Jiang, Weikang Yang   +8 more
wiley   +1 more source