Results 81 to 90 of about 12,609 (222)

CAZy-HABench30K: A Homology-Aware Benchmark Dataset for CAZy Enzyme Family Classification

This dataset contains the CAZy-HABench30K benchmark used for homology-aware CAZy enzyme family classification. The dataset includes 30,000 protein sequences collected from UniProt and annotated with CAZy family and class labels.
Yurttakal, Ahmet Haşim
core   +1 more source

Slope aspect affects the soil microbial communities in karst tiankeng negative landforms

BMC Ecology and Evolution, 2022
Background Karst tiankeng is a large-scale negative surface terrain, and slope aspects affect the soil conditions, vegetation and microbial flora in the tiankeng.
Cong Jiang, Sufeng Zhu, Jie Feng, Wei Shui   +3 more
doaj   +1 more source

ExMODE: A comprehensive resource for extremophile genomic and functional exploration

iMetaOmics, EarlyView.
ExMODE (https://db.genomics.cn/exmode/) integrates 3518 samples to build a unified extremophile resource, which hosts 1.35 billion habitat‐specific non‐redundant genes, 5.25 million representative protein structures, 67,026 metagenome‐assembled genomes (MAGs), and 164,132 biosynthetic gene clusters (BGCs). By combining sequence‐, structure‐, and genome‐
Denghui Li, Kailong Ma, Xiaoqiang Li, Jieni Wang, Zhen Cui, Yulu Zhang, Weiwen Wang, Jiawei Tong, Yang Guo, Zongan Wang, Peiyun Zeng, Jieyu Wang, Xiaokai Xu, Nannan Zhang, Yingying Zhang, Jing Chen, Qingjiang Hu, Wenzhen Yang, Zhiyong Li, Tao Yang, Wensi Du, Zhicheng Xu, Zhen Yue, Jian Wang, Guangyi Fan, Weijia Zhang, Xun Xu, Liujie Huo, Xiaofeng Wei, Liang Meng, Shanshan Liu   +30 more
wiley   +1 more source

Higher NO3−‐N Levels Under Mulberry (Morus alba L.) Planting Enhanced CAZyme Abundance, Increasing Soil Carbon Stability

Land Degradation &Development, EarlyView.
ABSTRACT Afforestation is widely advocated for boosting carbon (C) sequestration. However, the stability of soil C pools in economically and culturally significant mulberry plantations remains poorly understood. The soil organic C (SOC) contents in different aggregates and the oxidizable OC fractions were measured.
Zi Yang, Weiguo Zhao, Jinjin Yang, Zhenjiang Wang, Weijun Zhu, Changyu Qiu, Qiang Lin, Meina Zhu, Mengdi Zhao   +8 more
wiley   +1 more source

Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse

Microbiome, 2023
Background As a domesticated species vital to humans, horses are raised worldwide as a source of mechanical energy for sports, leisure, food production, and transportation.
Cunyuan Li, Xiaoyue Li, Rongjun Guo, Wei Ni, Kaiping Liu, Zhuang Liu, Jihong Dai, Yueren Xu, Shamshidin Abduriyim, Zhuangyuan Wu, Yaqi Zeng, Bingbing Lei, Yunfeng Zhang, Yue Wang, Weibin Zeng, Qiang Zhang, Chuangfu Chen, Jun Qiao, Chen Liu, Shengwei Hu   +19 more
doaj   +1 more source

First genome sequence of a European Alternaria brassicae isolate and genes involved in early development of alternaria leaf spot on Brassica juncea

Pest Management Science, EarlyView.
This article reports the first genome sequence of a UK Alternaria brassicae isolate. Dual RNA‐sequencing profiling of A. brassicae‐infected Brassica juncea leaves identified differentially expressed genes involved in pathogenicity and host response pathways in moderately resistant Sej‐2 (2) and moderately susceptible Pusa Jaikisan cultivars.
Kevin M. King, Graham McLaughlin, Chinthani S. Karandeni Dewage, Zedi Gao, David J. Hughes, Jonathan S. West, Henrik U. Stotz   +6 more
wiley   +1 more source

Straw-induced CAZy genes.

, 2012
CAZy genes strongly induced (≥20 x) and expressed (≥50 RPKM) after 24 h in Straw. An02g02540 has not been annotated in the ATCC 1015 genome but was found on chromosome 4_2 (5′-669026 - 667767-3′).
Martin J. Blythe (144604), Gregory A. Tucker (144609), Sunir Malla (60235), Stéphane Delmas (144600), Susan Liddell (144607), Roger Ibbett (144605), David B. Archer (144610), Steven T. Pullan (144601), Matthew Kokolski (144603), Aziz Aboobaker (144608), Sanyasi Gaddipati (144602), Maria Campbell (144606)   +11 more
core   +1 more source

Effect of Social Rank on Gut Microbes and Their Metabolites of Greater Long‐Tailed Hamsters (Tscherskia triton)

Integrative Zoology, EarlyView.
Social rank in greater long‐tailed hamsters (Tscherskia triton) shapes gut microbiota composition and metabolite profiles. Dominant males exhibit a “high‐vigilance, metabolically activated” phenotype, with elevated aggression and specific gut microbiota enriched in energy‐harvesting taxa and fecal queuine.
Da Zhang, Xiaoming Xu, Zhibin Zhang
wiley   +1 more source

Environmental Identification of Novel Enzymes for Polyurethane and Polyamide Degradation

Angewandte Chemie, Volume 138, Issue 35, 24 August 2026.
Heteroatom‐containing plastics such as polyurethanes and nylons are produced at scale yet remain largely unrecycled. Biocatalysts offer a promising route to depolymerization under mild conditions. Here, we present a screening platform for the discovery of novel polyurethane‐ and nylon‐degrading enzymes from environmental samples and demonstrate ...
Malthe Kjær Bendtsen, Andreas Møllebjerg, Samuel Peña‐Díaz, Rosie Graham, Nicolai Claus Petersen, Bjørk Nolsøe Isaksen, Mathias Carstensen, Martin B. Johansen, Andreas Sommerfeldt, Allan R. Petersen, Iddi Khamisi Chuma, Cecilie Ryberg, Thomas Rea Wittenborn, Virginia Gichuru, Huabing Wang, Carsten Scavenius, Alexander Sandahl, Daniel E. Otzen   +17 more
wiley   +2 more sources

Composition and biosynthetic machinery of the Blumeria graminis f. sp. hordei conidia cell wall

The Cell Surface, 2019
Infection of barley with the powdery mildew causal agent, Blumeria graminis f. sp. hordei (Bgh), can lead to devastating damage to barley crops. The recent emergence of fungicide resistance imposes a need to develop new antifungal strategies. The enzymes
Trang A.T. Pham, Bianca A. Kyriacou, Julian G. Schwerdt, Neil J. Shirley, Xiaohui Xing, Vincent Bulone, Alan Little   +6 more
doaj   +1 more source