Results 91 to 100 of about 459,773 (306)

ChIP-Seq of ZmSNAC1, ZmNAC23 and ZmNAC20

, 2019
To explore the function of ZmSNAC1, ZmNAC23 and ZmNAC20 in salt stress resistance and plant development, the downstream target genes were explored by ChIP-Seq with ZmNACs-GFP transgenic maize plants (pooled leaves and roots at V1 stage)
can liu (4453648)
core   +1 more source

ATAC2GRN: optimized ATAC-seq and DNase1-seq pipelines for rapid and accurate genome regulatory network inference

BMC Genomics, 2018
Background Chromatin accessibility profiling assays such as ATAC-seq and DNase1-seq offer the opportunity to rapidly characterize the regulatory state of the genome at a single nucleotide resolution.
Thomas J. F. Pranzatelli, Drew G. Michael, John A. Chiorini   +2 more
doaj   +1 more source

GATA4‐Driven Transcription of HtrA1 Promotes Cellular Senescence in Ménière's Disease and Age‐Related Audio‐Vestibular Dysfunction

Advanced Science, EarlyView.
This study identifies the HDAC6/GATA4/HtrA1 axis as a critical driver of cellular senescence in the inner ear. GATA4 nuclear translocation, facilitated by HDAC6 downregulation, transcriptionally activates HtrA1, promoting hair cell senescence, SASP, and audio‐vestibular dysfunction in models of Ménière's disease and age‐related audio‐vestibular ...
Na Zhang, Na Li, Yan Wang, Jing Zhang, Jiahui Liu, Lei Chen, Yongdong Song, Yurong Mu, Yuechen Han, Yafeng Lyu, Xiaofei Li, Hanyue Wang, Jing Wang, Yao Lu, Zhaomin Fan, Daogong Zhang, Haibo Wang   +16 more
wiley   +1 more source

P-TEFb/ChIP-Seq-Peak: v1.0.0

<p>ChIP-Seq-Peak</p ...
David H. Price
core   +1 more source

ChIPseqRUs: A pipeline for ChIP-seq preprocessing

, 2016
<p>A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.</p ...
Loh, Yong-Hwee (5265370), Shen, Li (5265367), Shen, Li, Shao, Ning-Yi, Shao, Ning-Yi (5265373), Loh, Yong-Hwee   +5 more
core   +1 more source

TRMT6‐Mediated m1A Modification of CDK9 mRNA Is a Dual‐Pronged Pathogenic Driver for HBV‐Related Hepatocellular Carcinoma

Advanced Science, EarlyView.
TRMT6‐mediated m1A modification in CDK9 mRNA enhances its mRNA stability and translation efficiency, thereby increasing the protein levels of CDK9. Upregulated CDK9 promotes the progression of HCC by elevating the levels of oncogenic factors including p‐STAT3, MCL1, and BCL‐2. On the other hand, CDK9 phosphorylates TARDBP at Ser254 to activate HBV core
Rui Zhang, Dandan Zong, Rui Liu, Yubo Wang, Qingqing Gu, Yao Yao, Wenfang Zheng, Mengmeng Yuan, Simeng Wang, Rongrong Cui, Daxu Li, Siwen Dang, Peng Hou   +12 more
wiley   +1 more source

Informative sequence-based models for fragment distributions in ChIP-seq, RNA-seq and ChIP-chip data [PDF]

Many high throughput sequencing protocols for RNA and DNA require that the polynucleic acid is fragmented so that the identity of a limited number of nucleic acids of one or both of the ends of the fragments can be determined by sequencing. The nucleic
Dyer, Nigel
core  

vanrooij-lab/chip-seq-pipeline2: timmer-et-al-2024

<p>Scripts chip-seq pipeline used for Timmer et al.
Jin wook Lee, Soo Lee, J. Seth Strattan
core   +1 more source

ChIP-seq of PbAP2R-2 and differential expression analysis between WT and pbap2r-2(-).

, 2023
(A) Cross-fertilization assay among pbap2r-2(-), p48/45(-) and p47(-). The number of normal and abnormal ookinetes are indicated as white and grey bars, respectively. Error bars indicate the standard error of the mean (n = 3).
Izumi Kaneko (121023), Shiroh Iwanaga (121019), Tsubasa Nishi (12133480), Masao Yuda (70356)   +3 more
core   +1 more source

Universal count correction for high-throughput sequencing.

PLoS Computational Biology, 2014
We show that existing RNA-seq, DNase-seq, and ChIP-seq data exhibit overdispersed per-base read count distributions that are not matched to existing computational method assumptions.
Tatsunori B Hashimoto, Matthew D Edwards, David K Gifford   +2 more
doaj   +1 more source